Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,115,786 |
T→C |
intergenic (‑28/+55) |
msyB ← / ← mdtG |
hypothetical protein/predicted drug efflux system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,115,786 | 0 | T | C | 100.0%
| 206.9
/ NA
| 56 | intergenic (‑28/+55) | msyB/mdtG | hypothetical protein/predicted drug efflux system |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (22/34); total (22/34) |
TTCTTCAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGTTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCA > W3110S.gb/1115732‑1115843
|
ttcttcAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAgg < 1:2778676/61‑1 (MQ=255)
ttcttcAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAgg < 1:720126/61‑1 (MQ=255)
ttcttcAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAgg < 1:2263400/61‑1 (MQ=255)
ttcttcAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAgg < 1:321804/61‑1 (MQ=255)
ttcttcAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAgg < 1:616674/61‑1 (MQ=255)
ttcttcAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAgg < 1:3690746/61‑1 (MQ=255)
ttcttcAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAgg < 1:4290150/61‑1 (MQ=255)
ttcttcAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAgg < 1:3904322/61‑1 (MQ=255)
ttcttcAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAgg < 1:1788425/61‑1 (MQ=255)
ttcttcAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAgg < 1:1778901/61‑1 (MQ=255)
cAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAg > 1:4219307/1‑62 (MQ=255)
cAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAg > 1:3796588/1‑62 (MQ=255)
cAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAg > 1:560162/1‑62 (MQ=255)
cAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAg > 1:681838/1‑62 (MQ=255)
cAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAg > 1:683519/1‑62 (MQ=255)
atcaCGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCg > 1:4156699/1‑58 (MQ=255)
atcaCGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCg > 1:955160/1‑58 (MQ=255)
atcaCGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCg > 1:4658058/1‑58 (MQ=255)
atcaCGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCg > 1:754537/1‑58 (MQ=255)
atcaCGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCg > 1:252201/1‑58 (MQ=255)
atcaCGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCg > 1:1144884/1‑58 (MQ=255)
atcaCGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCg > 1:1950587/1‑58 (MQ=255)
atcaCGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCttt > 1:2430082/1‑62 (MQ=255)
atcaCGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCttt > 1:4572773/1‑62 (MQ=255)
atcaCGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCttt > 1:4549766/1‑62 (MQ=255)
atcaCGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCttt > 1:1633649/1‑62 (MQ=255)
atcaCGATTCTCCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCttt > 1:4287865/1‑62 (MQ=255)
atcaCGATTCTCACTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCg > 1:3143553/1‑58 (MQ=255)
ctcCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTa > 1:606862/1‑61 (MQ=255)
ctcCCTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTa > 1:413109/1‑61 (MQ=255)
cccTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTg < 1:2578981/39‑1 (MQ=255)
cccTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTg < 1:1136057/39‑1 (MQ=255)
cccTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTg < 1:1856144/39‑1 (MQ=255)
cccTTTGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTg < 1:2844289/39‑1 (MQ=255)
tttGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAg < 1:845808/62‑1 (MQ=255)
tttGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAg < 1:1745854/62‑1 (MQ=255)
tttGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAg < 1:1508881/62‑1 (MQ=255)
tttGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAg < 1:4553406/62‑1 (MQ=255)
tttGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAg < 1:2173065/62‑1 (MQ=255)
tttGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAg < 1:4622714/62‑1 (MQ=255)
tttGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAg < 1:1626648/62‑1 (MQ=255)
tttGAGTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAg < 1:504405/62‑1 (MQ=255)
gTTGATGAGGCTTCAGGGAAAAGGATATCTGATTCTCCGCTTTTGAAAGTATGAAAGGCGa > 1:1035039/1‑61 (MQ=255)
gTTGATGAGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGa > 1:4710183/1‑61 (MQ=255)
gaGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCa < 1:4707545/62‑1 (MQ=255)
gaGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCa < 1:2625665/62‑1 (MQ=255)
gaGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCa < 1:1432067/62‑1 (MQ=255)
gaGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCa < 1:1465034/62‑1 (MQ=255)
gaGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCa < 1:1513470/62‑1 (MQ=255)
gaGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCa < 1:3786805/62‑1 (MQ=255)
gaGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCa < 1:1762964/62‑1 (MQ=255)
gaGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCa < 1:1871374/62‑1 (MQ=255)
gaGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCa < 1:4080585/62‑1 (MQ=255)
aGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCa < 1:3636494/61‑1 (MQ=255)
aGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCa < 1:3726066/61‑1 (MQ=255)
aGGCTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCa < 1:2709389/61‑1 (MQ=255)
|
TTCTTCAAGCGTTGCGTACATGGTCATCACGATTCTCCCTTTGAGTTGATGAGGTTTCAGGGAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCA > W3110S.gb/1115732‑1115843
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
