Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,735,429 |
G→A |
A323T (GCA→ACA) |
bglH → |
carbohydrate‑specific outer membrane porin, cryptic |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,735,429 | 0 | G | A | 100.0%
| 389.7
/ NA
| 118 | A323T (GCA→ACA) | bglH | carbohydrate‑specific outer membrane porin, cryptic |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (65/53); total (65/53) |
Only 100 of 121 total aligned reads displayed.
ATGGGATAAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCGCATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAC > W3110S.gb/3735374‑3735481
|
aTGGGATAAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGcaca < 1:650318/58‑1 (MQ=255)
aTGGGATAAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGcaca < 1:2001837/58‑1 (MQ=255)
aTGGGATAAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATc > 1:2492428/1‑60 (MQ=255)
aTGGGATAAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCg > 1:2498146/1‑61 (MQ=255)
gggATAAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGa < 1:1110756/61‑1 (MQ=255)
gggATAAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGa < 1:1253415/61‑1 (MQ=255)
gggATAAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGa < 1:2178848/61‑1 (MQ=255)
aaaGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGaaaaa > 1:1773296/1‑60 (MQ=255)
aaaGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAg > 1:3260943/1‑61 (MQ=255)
aaaGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAg > 1:3186741/1‑61 (MQ=255)
aaaGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAg > 1:4225962/1‑61 (MQ=255)
aaaGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAg > 1:237986/1‑61 (MQ=255)
aaaGCCACCTTAATGGTAAGTGGTCGATAAGTCACGGCAAACGAAAGCACATCGGAAAAAg > 1:2247956/1‑61 (MQ=255)
cACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATc > 1:2249013/1‑62 (MQ=255)
cACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATc > 1:2894380/1‑62 (MQ=255)
cACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATc > 1:3119728/1‑62 (MQ=255)
cACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATc > 1:2585017/1‑62 (MQ=255)
cACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATc > 1:2542274/1‑62 (MQ=255)
cACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATc > 1:23797/1‑62 (MQ=255)
aCCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCa < 1:3217747/62‑1 (MQ=255)
aCCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCa < 1:3470171/62‑1 (MQ=255)
aCCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCa < 1:622821/62‑1 (MQ=255)
ccTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAg < 1:1983558/62‑1 (MQ=255)
cTTAATGGTAAGTGGTCGTTATGTCACGGCATACGAAAGCACATCGGAAAAAGATAATCAg > 1:1280875/1‑61 (MQ=255)
cTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAg > 1:4684874/1‑61 (MQ=255)
cTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAg > 1:4602354/1‑61 (MQ=255)
cTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAg < 1:2727968/61‑1 (MQ=255)
cTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAg > 1:15048/1‑61 (MQ=255)
gTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGAtaataa < 1:1961697/62‑1 (MQ=255)
gTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGAtaataa < 1:2332164/62‑1 (MQ=255)
gTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGAtaataa < 1:1465970/62‑1 (MQ=255)
gTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGAtaataa < 1:3927982/62‑1 (MQ=255)
gTAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGAtaataa < 1:3287355/62‑1 (MQ=255)
tAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGAtaataa < 1:3663413/61‑1 (MQ=255)
tAAGTGGTCGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAAc > 1:2814472/1‑62 (MQ=255)
cGTTATGTCACGGCAAACGAAATCACATCGGAAAAAGATAATCAGGATAATAACggg < 1:3837418/57‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCa < 1:4548612/44‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCa < 1:93682/44‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCa < 1:1885120/44‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCa < 1:1813044/44‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACggg < 1:3535188/57‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACggg < 1:2036972/57‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACggg < 1:1838546/57‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACggg < 1:2956414/57‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACggg < 1:3420437/57‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACggg < 1:351385/57‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACggg < 1:1754079/57‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACggg < 1:1551331/57‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACggg < 1:4686531/57‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACggg < 1:1381734/57‑1 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGtatt > 1:2326443/1‑61 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGtatt > 1:1633911/1‑61 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGtatt > 1:4379867/1‑61 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGtatt > 1:3337027/1‑61 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGtatt > 1:1442600/1‑61 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGtatt > 1:2068987/1‑61 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGtatt > 1:2249028/1‑61 (MQ=255)
cGTTATGTCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGtat > 1:4501632/1‑60 (MQ=255)
tCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTg < 1:2546535/61‑1 (MQ=255)
tCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTg < 1:4428567/61‑1 (MQ=255)
tCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTg < 1:4486052/61‑1 (MQ=255)
tCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTg < 1:4612139/61‑1 (MQ=255)
tCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTg < 1:1139366/61‑1 (MQ=255)
tCACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTg < 1:825605/61‑1 (MQ=255)
cACGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTg > 1:1813218/1‑60 (MQ=255)
cGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATg > 1:2250664/1‑54 (MQ=255)
cGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATg > 1:111373/1‑54 (MQ=255)
cGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATg > 1:2358880/1‑54 (MQ=255)
cGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATg > 1:4257580/1‑54 (MQ=255)
cGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATg > 1:1572177/1‑54 (MQ=255)
cGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATg > 1:4120356/1‑54 (MQ=255)
cGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATg > 1:1743206/1‑54 (MQ=255)
cGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATg > 1:364082/1‑54 (MQ=255)
cGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATg > 1:3057791/1‑54 (MQ=255)
cGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATg > 1:3278882/1‑54 (MQ=255)
cGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATg > 1:3587080/1‑54 (MQ=255)
cGGCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATg > 1:3450131/1‑54 (MQ=255)
ggCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGTAAAg < 1:2290463/62‑1 (MQ=255)
ggCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGaaa > 1:854986/1‑61 (MQ=255)
ggCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGaaa > 1:4027469/1‑61 (MQ=255)
ggCAAACGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAg < 1:2792761/62‑1 (MQ=255)
aaaCGAAAGCACATCGGAAAAAGATAATCAGGataa > 1:2682423/1‑36 (MQ=255)
aaaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGa > 1:3160497/1‑60 (MQ=255)
aaaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATa > 1:3715848/1‑62 (MQ=255)
aaaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATa > 1:1410723/1‑62 (MQ=255)
aaaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATa > 1:4410918/1‑62 (MQ=255)
aaaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATa > 1:40923/1‑62 (MQ=255)
aaaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATa > 1:3980683/1‑62 (MQ=255)
aaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGa > 1:207713/1‑50 (MQ=255)
aaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAc < 1:34384/62‑1 (MQ=255)
aaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAc > 1:2119999/1‑62 (MQ=255)
aaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAc < 1:3370564/62‑1 (MQ=255)
aaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAc < 1:3351888/62‑1 (MQ=255)
aaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAc > 1:2182873/1‑62 (MQ=255)
aaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAc < 1:411076/62‑1 (MQ=255)
aaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAc > 1:622291/1‑62 (MQ=255)
aaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAc > 1:2968000/1‑62 (MQ=255)
aaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAc < 1:83189/62‑1 (MQ=255)
aaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAc > 1:2659824/1‑62 (MQ=255)
aaCGAAAGCACATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAc > 1:2665376/1‑62 (MQ=255)
|
ATGGGATAAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCGCATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATAC > W3110S.gb/3735374‑3735481
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
