Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R2
|
154 |
32.4 |
3140800 |
76.4% |
2399571 |
54.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,621,230 |
G→A |
A133T (GCA→ACA) |
marR → |
DNA‑binding transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,621,230 | 0 | G | A | 100.0%
| 76.4
/ NA
| 25 | A133T (GCA→ACA) | marR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (8/17); total (8/17) |
CCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACG > W3110S.gb/1621193‑1621287
|
ccAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGACAACACTTGAGTATTTGCTTAAGa < 1:2849163/62‑1 (MQ=255)
ccAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGACAACACTTGAGTATTTGCTTAAGa < 1:2396188/62‑1 (MQ=255)
ccAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGACAACACTTGAGTATTTGCTTAAGa < 1:646420/62‑1 (MQ=255)
ccAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGACAACACTTGAGTATTTGCTTAAGa < 1:836394/62‑1 (MQ=255)
ccAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGACAACACTTGAGTATTTGCTTAAGa < 1:2321822/62‑1 (MQ=255)
ccAAGAATTAACAAAAAACCTGACGGCGGACGAAGGGACAACACTTGAGTATTTGCTTAAGa < 1:401295/62‑1 (MQ=255)
ttAACAAAAAACCTGACGGCTGACGAAGTGACAACACTTGAGTATTTGCTTATGAAAGTCCt > 1:747019/1‑62 (MQ=255)
ttAACAAAAAACCTGACGGCGGACGAAGTGACAACACTTGAGTATTTGCTTAAGAAAGTcc > 1:453921/1‑61 (MQ=255)
ttAACAAAAAACCTGACGGCGGACGAAGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCt > 1:1959414/1‑62 (MQ=255)
ttAACAAAAAACCTGACGGCGGACGAAGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCt > 1:1689173/1‑62 (MQ=255)
ttAACAAAAAACCTGACGGCGGACGAAGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCt > 1:1491378/1‑62 (MQ=255)
ttAACAAAAAACCTGACGGCGGACGAAGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCt > 1:1337758/1‑62 (MQ=255)
ttAACAAAAAACCTGACGGCGGACGAAGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCt > 1:3060024/1‑62 (MQ=255)
ttAACAAAAAACCTGACGGCGGACGAAGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCt > 1:919545/1‑62 (MQ=255)
aGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACg < 1:2598460/62‑1 (MQ=255)
aGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACg < 1:794719/62‑1 (MQ=255)
aGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACg < 1:4540/62‑1 (MQ=255)
aGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACg < 1:350531/62‑1 (MQ=255)
aGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACg < 1:3004010/62‑1 (MQ=255)
aGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACg < 1:1069675/62‑1 (MQ=255)
aGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACg < 1:233366/62‑1 (MQ=255)
aGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACg < 1:209516/62‑1 (MQ=255)
aGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACg < 1:1825468/62‑1 (MQ=255)
aGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACg < 1:1710246/62‑1 (MQ=255)
aGTGACAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACg < 1:1290308/62‑1 (MQ=255)
|
CCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAACAAAAAAGAGGTATGACG > W3110S.gb/1621193‑1621287
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
