Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I2 R2
|
64 |
60.0 |
3197630 |
92.7% |
2964203 |
60.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
291,204 |
T→C |
I274T (ATC→ACC) |
ppiD → |
peptidyl‑prolyl cis‑trans isomerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 291,204 | 0 | T | C | 100.0%
| 157.2
/ NA
| 43 | I274T (ATC→ACC) | ppiD | peptidyl‑prolyl cis‑trans isomerase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (30/13); total (30/13) |
TATCCAGAGCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGATTTTGCT > minE/291136‑291271
|
tatCCAGAGCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCAccc < 1:2037357/71‑1 (MQ=255)
tCCAGAGCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCa < 1:18770/70‑1 (MQ=255)
agagCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGAc > 1:2631560/1‑70 (MQ=255)
gagCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGAcc > 1:2056475/1‑70 (MQ=255)
gagCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCa < 1:3005400/71‑1 (MQ=255)
agCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCaa < 1:530407/71‑1 (MQ=255)
cGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCa > 1:2319618/1‑62 (MQ=255)
cGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCa > 1:326628/1‑62 (MQ=255)
cGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCa > 1:1983826/1‑62 (MQ=255)
cGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTg > 1:1707367/1‑68 (MQ=255)
cGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTg > 1:453675/1‑68 (MQ=255)
tCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGaa > 1:1798173/1‑61 (MQ=255)
cAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGa > 1:3127102/1‑70 (MQ=255)
aGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCaaaa > 1:717842/1‑54 (MQ=255)
aGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCaaaa > 1:350193/1‑54 (MQ=255)
aGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCaaaa > 1:2212478/1‑54 (MQ=255)
tCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGaaa > 1:2302344/1‑67 (MQ=255)
ttCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCaaa < 1:1599571/45‑1 (MQ=255)
ttCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACt > 1:930754/1‑71 (MQ=255)
ttCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACt > 1:383202/1‑71 (MQ=255)
cACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAAc > 1:1907839/1‑45 (MQ=255)
cACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAAc > 1:661461/1‑45 (MQ=255)
cACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAAc > 1:332085/1‑45 (MQ=255)
cACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAAc > 1:796530/1‑45 (MQ=255)
cACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATg < 1:53535/53‑1 (MQ=255)
cACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGa < 1:90358/54‑1 (MQ=255)
cACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACtt > 1:1357766/1‑70 (MQ=255)
cACCCAGCCGCAGCGTACACGCTACAGCATCACCCAGACCAAAAc > 1:2456500/1‑45 (MQ=255)
cccAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTtgat < 1:2396241/71‑1 (MQ=255)
cccAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTtgat < 1:1275188/71‑1 (MQ=255)
cccAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTtgat < 1:1259982/71‑1 (MQ=255)
aGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAg > 1:2899091/1‑71 (MQ=255)
aGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAg > 1:2693115/1‑71 (MQ=255)
aGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAg > 1:1557131/1‑71 (MQ=255)
gCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGc < 1:1174994/54‑1 (MQ=255)
gCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTg > 1:2053245/1‑70 (MQ=255)
gCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTg > 1:1579894/1‑70 (MQ=255)
gCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAg > 1:2678992/1‑42 (MQ=255)
gCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAg > 1:1071943/1‑42 (MQ=255)
gCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAg > 1:1809829/1‑42 (MQ=255)
gCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAg > 1:1116750/1‑42 (MQ=255)
cTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTg < 1:1825742/71‑1 (MQ=255)
cAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGAtt < 1:765683/71‑1 (MQ=255)
aGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGAttt < 1:2990992/71‑1 (MQ=255)
tcaccCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGATTTtgct < 1:859039/71‑1 (MQ=255)
|
TATCCAGAGCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGATTTTGCT > minE/291136‑291271
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
