Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I2 R2
|
64 |
60.0 |
3197630 |
92.7% |
2964203 |
60.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,281,121 |
A→G |
F67S (TTT→TCT) |
fabR ← |
DNA‑binding transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,281,121 | 0 | A | G | 100.0%
| 196.1
/ NA
| 54 | F67S (TTT→TCT) | fabR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (31/23); total (31/23) |
TAGCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGAAGCTGCGT > minE/2281054‑2281186
|
tAGCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATaagaag < 1:2170684/71‑1 (MQ=255)
tAGCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATaagaag < 1:2135579/71‑1 (MQ=255)
tAGCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATaagaag < 1:1338481/71‑1 (MQ=255)
tAGCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATaagaag < 1:478568/71‑1 (MQ=255)
gCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAagag < 1:335756/71‑1 (MQ=255)
gCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAagag < 1:707904/71‑1 (MQ=255)
gCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAagag < 1:2855404/71‑1 (MQ=255)
gCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAagag < 1:615435/71‑1 (MQ=255)
ttAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTg > 1:3170160/1‑71 (MQ=255)
ttAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTg > 1:2738421/1‑71 (MQ=255)
ttAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTg > 1:2843493/1‑71 (MQ=255)
tAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTgg > 1:2509091/1‑71 (MQ=255)
aaaCCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTgg > 1:713619/1‑70 (MQ=255)
aaCCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTgg > 1:705647/1‑69 (MQ=255)
aCCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAg < 1:2735735/71‑1 (MQ=255)
aCCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAg < 1:1843081/71‑1 (MQ=255)
ccGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTggggg > 1:1722721/1‑68 (MQ=255)
ccGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAg > 1:2823636/1‑70 (MQ=255)
ccGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAg > 1:1719236/1‑70 (MQ=255)
ccGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAg > 1:2460555/1‑70 (MQ=255)
atcaACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGcc < 1:2683800/69‑1 (MQ=255)
atcaACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCg < 1:1510859/71‑1 (MQ=255)
atcaACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCg < 1:2249058/71‑1 (MQ=255)
atcaACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCAATAAGAAGAGGTGGGAGCAATGcc < 1:1178995/69‑1 (MQ=255)
tcaACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGc > 1:2651171/1‑71 (MQ=255)
aaCCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCtt > 1:2230130/1‑71 (MQ=255)
aCCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCtt > 1:2425790/1‑70 (MQ=255)
aCCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCtt > 1:2429465/1‑70 (MQ=255)
aCCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCtt > 1:30466/1‑70 (MQ=255)
cATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCAc < 1:841316/71‑1 (MQ=255)
cATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCAc < 1:1865647/71‑1 (MQ=255)
cATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCAc < 1:686119/71‑1 (MQ=255)
tGGTCAGACCCAGTTCGTCTACGTCGCGGTAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCa > 1:1705739/1‑68 (MQ=255)
tGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTc > 1:1459324/1‑67 (MQ=255)
tGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCa > 1:2035843/1‑68 (MQ=255)
tGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCa > 1:1984455/1‑68 (MQ=255)
tGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCa > 1:1279353/1‑68 (MQ=255)
tCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAagag < 1:1095472/44‑1 (MQ=255)
tCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGcc < 1:1722033/71‑1 (MQ=255)
aGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAgg > 1:1860817/1‑43 (MQ=255)
aGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCa > 1:2095076/1‑70 (MQ=255)
cccAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCa > 1:730883/1‑67 (MQ=255)
cccAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCa > 1:2448717/1‑67 (MQ=255)
ccAGTTCGTCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCa > 1:1611009/1‑71 (MQ=255)
tCTACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACt < 1:1871094/71‑1 (MQ=255)
tACGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACt > 1:2556865/1‑69 (MQ=255)
cGTCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAgg > 1:2691068/1‑71 (MQ=255)
tCGCGGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCt < 1:1006401/71‑1 (MQ=255)
cgGAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGc < 1:2005843/71‑1 (MQ=255)
ggAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACtt < 1:2674988/51‑1 (MQ=255)
ggAAATGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCg < 1:2519138/71‑1 (MQ=255)
aaaTGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCg > 1:1834127/1‑69 (MQ=255)
aaaTGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCg > 1:2900773/1‑69 (MQ=255)
tGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCATGCAAACTCAGGCTGGCGAAGCt < 1:264683/71‑1 (MQ=255)
tGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGAAGCt < 1:2388954/71‑1 (MQ=255)
tGCCGATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGAAGCt < 1:947686/71‑1 (MQ=255)
gATAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGAAGCTGCGt > 1:2801966/1‑71 (MQ=255)
aTAAGAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGaa > 1:864891/1‑63 (MQ=255)
|
TAGCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTCGTCTACGTCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCACTTCACGCAAACTCAGGCTGGCGAAGCTGCGT > minE/2281054‑2281186
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
