Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I2 R2
|
64 |
60.0 |
3197630 |
92.7% |
2964203 |
60.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,625,149 |
G→A |
R16H (CGT→CAT) |
ftsX → |
predicted transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,625,149 | 0 | G | A | 100.0%
| 229.5
/ NA
| 68 | R16H (CGT→CAT) | ftsX | predicted transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (28/40); total (28/40) |
GCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCAAA > minE/2625086‑2625209
|
gCATGGAGGCGTGGGCCATGAATAAGCGCTATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTg < 1:1639821/69‑1 (MQ=255)
gCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTg < 1:2184091/69‑1 (MQ=255)
tGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTg < 1:527942/58‑1 (MQ=255)
tGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTaa < 1:464422/71‑1 (MQ=255)
gggCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTaaa > 1:112572/1‑71 (MQ=255)
gggCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTaaa > 1:1314377/1‑71 (MQ=255)
cATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcgg < 1:480196/71‑1 (MQ=255)
cATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcgg < 1:538757/71‑1 (MQ=255)
cATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcgg > 1:2980350/1‑71 (MQ=255)
cATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcgg > 1:2318388/1‑71 (MQ=255)
cATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcgg < 1:1924556/71‑1 (MQ=255)
aTGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATc < 1:1279399/49‑1 (MQ=255)
aTGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATc < 1:1585036/49‑1 (MQ=255)
aTGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggt > 1:291695/1‑71 (MQ=255)
aTGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggt > 1:1848387/1‑71 (MQ=255)
gAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggtcg > 1:2940963/1‑71 (MQ=255)
gAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggtcg > 1:2805351/1‑71 (MQ=255)
gAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggtcg > 1:2261065/1‑71 (MQ=255)
gAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggtcg > 1:95792/1‑71 (MQ=255)
gAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggtcg > 1:986152/1‑71 (MQ=255)
aTAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCg > 1:3072750/1‑52 (MQ=255)
aTAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTcggc > 1:1234780/1‑71 (MQ=255)
aTAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTcggc < 1:543006/71‑1 (MQ=255)
tAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTcggcg < 1:2322588/71‑1 (MQ=255)
aGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggt > 1:2583506/1‑64 (MQ=255)
gcgcGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCt > 1:1480619/1‑71 (MQ=255)
gcgcGATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCt > 1:78127/1‑71 (MQ=255)
cgcgATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCt < 1:2390481/70‑1 (MQ=255)
gcgATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTc > 1:1476164/1‑70 (MQ=255)
gcgATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTc > 1:1596160/1‑70 (MQ=255)
gcgATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCa < 1:1769756/71‑1 (MQ=255)
gcgATGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCa < 1:1476109/71‑1 (MQ=255)
tGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTaaa < 1:173368/52‑1 (MQ=255)
tGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTaaa < 1:1724407/52‑1 (MQ=255)
tGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTaaa < 1:1610458/52‑1 (MQ=255)
tGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTaaa < 1:2202971/52‑1 (MQ=255)
tGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGc > 1:1950038/1‑70 (MQ=255)
tGCAATCAATCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGc > 1:1679348/1‑70 (MQ=255)
caatcaatCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAc < 1:1387041/71‑1 (MQ=255)
caatcaatCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAc < 1:1590232/71‑1 (MQ=255)
caatcaatCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAc < 1:3060288/71‑1 (MQ=255)
caatcaatCATATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAc < 1:1604164/71‑1 (MQ=255)
atcaatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcgg < 1:397464/71‑1 (MQ=255)
atcaatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcgg < 1:2366861/71‑1 (MQ=255)
atcaatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcgg < 1:2551640/71‑1 (MQ=255)
atcaatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcgg < 1:1388439/71‑1 (MQ=255)
aatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcggcgg < 1:1182461/71‑1 (MQ=255)
aatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcggcgg < 1:1837261/71‑1 (MQ=255)
aatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcggcg < 1:586539/70‑1 (MQ=255)
aatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcggcg < 1:3047938/70‑1 (MQ=255)
aatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcggcg < 1:43029/70‑1 (MQ=255)
aatcaTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcggcg < 1:1224542/70‑1 (MQ=255)
caTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggtcgg > 1:3012174/1‑50 (MQ=255)
caTATTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAAtcggtcgg > 1:1602395/1‑50 (MQ=255)
atatTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGt < 1:2808368/71‑1 (MQ=255)
atatTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGt < 1:127962/71‑1 (MQ=255)
tatTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTa < 1:1424175/71‑1 (MQ=255)
tatTCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTa < 1:1914338/71‑1 (MQ=255)
ttCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCa < 1:2563933/53‑1 (MQ=255)
ttCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcggcg > 1:1516420/1‑63 (MQ=255)
ttCGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcggcg > 1:3035097/1‑63 (MQ=255)
cGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACg > 1:1252294/1‑70 (MQ=255)
cGGCAGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACg > 1:2537909/1‑70 (MQ=255)
aGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGt < 1:837570/62‑1 (MQ=255)
aGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTaa > 1:1428334/1‑64 (MQ=255)
aGTTTGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCAcc > 1:2380290/1‑70 (MQ=255)
tttGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCaaa < 1:1657427/71‑1 (MQ=255)
tttGGCGGGCATCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCaaa < 1:985578/71‑1 (MQ=255)
gggcaTCTTGAGCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGAcgg < 1:1568946/47‑1 (MQ=255)
|
GCATGGAGGCGTGGGCCATGAATAAGCGCGATGCAATCAATCATATTCGGCAGTTTGGCGGGCGTCTTGATCGCTTCCGTAAATCGGTCGGCGGCTCAGGCGACGGCGGTCGTAACGCACCAAA > minE/2625086‑2625209
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
