Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F1 I0 R2
|
251 |
90.0 |
5200563 |
86.9% |
4519289 |
59.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,595,746 |
G→A |
7.5% |
I284I (ATC→ATT) |
arsB ← |
arsenite/antimonite transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,595,746 | 0 | G | A | 7.5%
| 368.2
/ 14.0
| 120 | I284I (ATC→ATT) | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base G (56/55); new base A (6/3); total (62/58) |
| Fisher's exact test for biased strand distribution p-value = 4.93e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 |
Only 100 of 133 total aligned reads displayed.
CCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGC > minE/2595678‑2595811
|
ccAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATGAACCACCAGATACATGCCGAGCGAGAAGAt > 1:1517447/1‑71 (MQ=255)
aaGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACaa < 1:423141/71‑1 (MQ=255)
aaGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACaa < 1:4456247/71‑1 (MQ=255)
aaGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACaa < 1:4489240/71‑1 (MQ=255)
aGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt < 1:1029546/71‑1 (MQ=255)
ttCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:1283160/71‑1 (MQ=255)
ttCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:470645/71‑1 (MQ=255)
tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGa > 1:318921/1‑61 (MQ=255)
tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:279900/1‑62 (MQ=255)
tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:814021/1‑62 (MQ=255)
tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:2813726/1‑62 (MQ=255)
tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:219767/1‑62 (MQ=255)
tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:3699924/1‑62 (MQ=255)
tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATATGc > 1:2082750/1‑69 (MQ=255)
ttAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:2745119/59‑1 (MQ=255)
ttAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:4329728/59‑1 (MQ=255)
ttAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:657498/59‑1 (MQ=255)
cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:3516885/1‑61 (MQ=255)
cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:110463/1‑61 (MQ=255)
cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:2252767/1‑61 (MQ=255)
cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGAGAGAAGATGACAATCTGCCa > 1:70461/1‑61 (MQ=255)
ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:2963143/71‑1 (MQ=255)
ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:736425/71‑1 (MQ=255)
ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:2506876/71‑1 (MQ=255)
ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:4508988/71‑1 (MQ=255)
ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:4911483/71‑1 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:1684842/1‑53 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:2824700/1‑53 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:3807976/1‑53 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:4869153/1‑53 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:3783625/1‑53 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:165568/1‑53 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:3557356/1‑53 (MQ=255)
gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGa > 1:4760159/1‑71 (MQ=255)
cgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGAc > 1:3986230/1‑71 (MQ=255)
ccATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:3544914/1‑38 (MQ=255)
ccATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:1058160/1‑38 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:2543655/38‑1 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:2160791/38‑1 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:4625424/38‑1 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:1837648/38‑1 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:1283598/38‑1 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:1058710/38‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:2710958/43‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:2655549/43‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:2643766/43‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:4440418/43‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:474156/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:4839466/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:944278/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3356256/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3072604/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:2562069/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:2890437/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCTAGGGGGCACCGCGCAGGACTTTACCCg > 1:1994388/1‑70 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:5053945/52‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1640059/52‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1278359/52‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1114187/52‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:3025739/52‑1 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3766233/40‑1 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:1368904/1‑42 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:3203780/1‑44 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:728254/1‑44 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:1855670/1‑44 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:1564081/1‑44 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:4245624/1‑44 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTa < 1:489454/70‑1 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:824228/1‑71 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:3996750/1‑71 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:1811029/1‑71 (MQ=255)
aGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg > 1:471589/1‑70 (MQ=255)
gATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa < 1:5047097/71‑1 (MQ=255)
tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:4321383/71‑1 (MQ=255)
tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:3476054/71‑1 (MQ=255)
tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:3809251/71‑1 (MQ=255)
tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGAAt < 1:196274/70‑1 (MQ=255)
aCATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:1059677/1‑71 (MQ=255)
aCATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:2745877/1‑71 (MQ=255)
aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:4496596/1‑38 (MQ=255)
aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:2969399/1‑38 (MQ=255)
aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:2365532/1‑38 (MQ=255)
aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:565496/1‑38 (MQ=255)
aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:2449413/1‑38 (MQ=255)
aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:4860973/1‑38 (MQ=255)
tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTccg > 1:4369955/1‑52 (MQ=255)
tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:3760988/1‑70 (MQ=255)
gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:4383066/69‑2 (MQ=255)
gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:3026550/69‑2 (MQ=255)
gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:1917654/55‑1 (MQ=255)
gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGc < 1:1119414/71‑1 (MQ=255)
agaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTa < 1:786577/50‑1 (MQ=255)
agaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTa < 1:2224188/50‑1 (MQ=255)
gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa > 1:2173623/1‑55 (MQ=255)
aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:3255475/62‑1 (MQ=255)
aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:3610010/62‑1 (MQ=255)
aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:2933304/62‑1 (MQ=255)
aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:414333/62‑1 (MQ=255)
agaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTaa > 1:2548385/1‑48 (MQ=255)
gaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGtt > 1:4425836/1‑62 (MQ=255)
|
CCAGAAAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGC > minE/2595678‑2595811
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
