Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,575,785 |
C→T |
A378T (GCT→ACT) |
pqqL ← |
predicted peptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,575,785 | 0 | C | T | 100.0%
| 130.0
/ NA
| 39 | A378T (GCT→ACT) | pqqL | predicted peptidase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (13/26); total (13/26) |
GATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGCAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCGCAGCAT > W3110S.gb/1575725‑1575841
|
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:1131259/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:309825/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:584287/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:2261866/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:2218757/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:714591/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:1971155/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:1943733/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:177754/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:170430/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:1704179/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:1666714/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:1424636/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:1375203/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:1355335/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:1352384/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:943688/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:1234983/65‑1 (MQ=255)
gATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTGCTTCAGTAGaa < 1:389124/65‑1 (MQ=255)
aTCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:510805/64‑1 (MQ=255)
aTCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:382503/64‑1 (MQ=255)
ggCGGGTAGATTTGACATCATCGAGTTCTTCAGTAGaa < 1:2124020/38‑1 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCgcag > 1:716508/1‑65 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCgcag > 1:800453/1‑65 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCgcag > 1:494355/1‑65 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCgcag > 1:952307/1‑65 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCgcag > 1:331186/1‑65 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCgcag > 1:2421205/1‑65 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCgcag > 1:2360380/1‑65 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCgcag > 1:2202807/1‑65 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCgcag > 1:1552740/1‑65 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCgcag > 1:1406090/1‑65 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCgcag > 1:1256562/1‑65 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCgca > 1:864065/1‑64 (MQ=255)
gAGTTCTTCAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTAgcag > 1:1160919/1‑65 (MQ=255)
ttcttcAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCGCAGCAt < 1:501757/65‑1 (MQ=255)
ttcttcAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCGCAGCAt < 1:2352656/65‑1 (MQ=255)
ttcttcAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCGCAGCAt < 1:706064/65‑1 (MQ=255)
ttcttcAGTAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCGCAGCAt < 1:871517/65‑1 (MQ=255)
|
GATCAACCGCATTTTTCAGCCAGGTGAGGCGGGTAGATTTGACATCATCGAGTTCTTCAGCAGAAAAACCATGCTGATCAATGGTTGCCAACTCTGCCATTAATGCATTCGCAGCAT > W3110S.gb/1575725‑1575841
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
