Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,865,587 |
T→C |
L8L (CTT→CTC) |
yeaD → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,865,587 | 0 | T | C | 100.0%
| 31.8
/ NA
| 10 | L8L (CTT→CTC) | yeaD | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/10); total (0/10) |
TAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGG > W3110S.gb/1865569‑1865633
|
tAAGAAAATTTTTGCCCTCCCGGTCATCGAACATATCTCCCCTGTCCTCTCCCGTCGTAAACTgg < 1:1797781/65‑1 (MQ=255)
tAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTgg < 1:1751818/65‑1 (MQ=255)
tAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTgg < 1:1948906/65‑1 (MQ=255)
tAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTgg < 1:2132785/65‑1 (MQ=255)
tAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTgg < 1:2226897/65‑1 (MQ=255)
tAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTgg < 1:2287311/65‑1 (MQ=255)
tAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTgg < 1:2299116/65‑1 (MQ=255)
tAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTgg < 1:618298/65‑1 (MQ=255)
aaGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTgg < 1:1379191/64‑1 (MQ=255)
aaGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTgg < 1:2096919/64‑1 (MQ=255)
|
TAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGG > W3110S.gb/1865569‑1865633
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
