Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
354 |
41.7 |
3110465 |
93.1% |
2895842 |
61.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,865,587 |
T→C |
L8L (CTT→CTC) |
yeaD → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,865,587 | 0 | T | C | 100.0%
| 174.8
/ NA
| 47 | L8L (CTT→CTC) | yeaD | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (25/22); total (25/22) |
TTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGT > W3110S.gb/1865531‑1865623
|
ttACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCa > 1:994702/1‑64 (MQ=255)
ttACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCa > 1:2531836/1‑64 (MQ=255)
ttACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCa > 1:1866417/1‑64 (MQ=255)
ttACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCa > 1:1742606/1‑64 (MQ=255)
ttACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCa > 1:2939517/1‑64 (MQ=255)
ttACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCa > 1:1474135/1‑64 (MQ=255)
ttACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCa > 1:1377813/1‑64 (MQ=255)
ttACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCa > 1:578391/1‑64 (MQ=255)
tGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcc < 1:1624821/65‑1 (MQ=255)
tGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcc < 1:2070789/65‑1 (MQ=255)
tGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcc < 1:2037826/65‑1 (MQ=255)
tGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcc < 1:1951630/65‑1 (MQ=255)
tGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcc < 1:648145/65‑1 (MQ=255)
tGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcc < 1:2919132/65‑1 (MQ=255)
tGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcc < 1:3056841/65‑1 (MQ=255)
tGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcc < 1:1455871/65‑1 (MQ=255)
aaGTTAAAGGTCTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:1608732/65‑1 (MQ=255)
aaGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:330233/65‑1 (MQ=255)
aaGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:751086/65‑1 (MQ=255)
aaGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:2098169/65‑1 (MQ=255)
aaGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:2255325/65‑1 (MQ=255)
aaGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:3077117/65‑1 (MQ=255)
aaGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:2139707/65‑1 (MQ=255)
aaGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:1380332/65‑1 (MQ=255)
aaGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:119091/65‑1 (MQ=255)
aaGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:1199876/65‑1 (MQ=255)
aaGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:1620262/65‑1 (MQ=255)
aaGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:2042708/65‑1 (MQ=255)
aaGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcc < 1:1591986/63‑1 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:429895/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:866006/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:822971/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:1949484/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:1204240/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:629805/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:1245234/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:531581/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:390906/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:1093317/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:324410/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:1515007/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:1584009/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:3017648/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 1:1889797/1‑64 (MQ=255)
cGTCATGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcg > 1:2887462/1‑63 (MQ=255)
cGTCAAGATTAAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccca > 1:2731954/1‑51 (MQ=255)
aTGATTTAGAAAATTTTTGCCCTCCCGGTCATCGAACAAATCTcccc < 1:947750/47‑1 (MQ=255)
|
TTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGT > W3110S.gb/1865531‑1865623
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
