Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I3 R1
|
178 |
99.0 |
1887089 |
95.3% |
1798395 |
63.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,419,604 |
T→C |
K40R (AAA→AGA) |
ydaE ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,419,604 | 0 | T | C | 100.0%
| 373.7
/ NA
| 98 | K40R (AAA→AGA) | ydaE | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/98); total (0/98) |
GGCACAAGCTTCACTGCAATATTTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCATGAAGTGA > W3110S.gb/1419582‑1419645
|
ggCTCAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:196700/64‑1 (MQ=255)
ggCGCAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1612751/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:253357/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:452850/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:438302/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:407220/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:397511/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:345920/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:334076/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:312401/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:300080/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:283415/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:278740/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:489155/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:245443/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:228496/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:226318/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:210337/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:209998/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:20982/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1845562/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1834522/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1821551/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1806131/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:740988/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:998469/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:968735/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:96492/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:960460/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:936354/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:926914/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:876655/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:828384/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:78746/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:778546/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:754755/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1819711/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:717577/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:708710/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:697123/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:615197/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:576896/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:571426/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:559175/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:542635/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:528818/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:507138/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:130319/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1443068/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1427278/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1804372/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:141393/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1366177/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1360537/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1360199/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1349155/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1339186/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1306195/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1425996/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1277475/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1252532/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1228548/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1203690/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:119353/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:116054/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1152930/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1134709/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1056371/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1037664/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1659918/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1792703/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1779122/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1731068/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1730819/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:171522/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1690266/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1684114/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1457928/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1648357/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1637573/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1628233/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1608098/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1466751/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1552696/64‑1 (MQ=255)
ggCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1496250/64‑1 (MQ=255)
ggCACAAGCTGCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1104475/64‑1 (MQ=255)
gCACACGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1410721/63‑1 (MQ=255)
gCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:143912/63‑1 (MQ=255)
gCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1756811/63‑1 (MQ=255)
gCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1499247/63‑1 (MQ=255)
gCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1227856/63‑1 (MQ=255)
gCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1257343/63‑1 (MQ=255)
gCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:714142/63‑1 (MQ=255)
gCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:704479/63‑1 (MQ=255)
gCACAAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1327032/63‑1 (MQ=255)
cacaAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1865559/62‑1 (MQ=255)
cacaAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:285188/62‑1 (MQ=255)
cacaAGCTTCACTGCAATATCTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCAtgaagtga < 1:1013477/62‑1 (MQ=255)
|
GGCACAAGCTTCACTGCAATATTTTCTCGGTTCGTCTTTTGATAAAATCCCGTGCATGAAGTGA > W3110S.gb/1419582‑1419645
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
