Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
354 |
41.7 |
3110465 |
93.1% |
2895842 |
61.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,609,975 |
C→T |
L254L (CTG→CTA) |
yneE ← |
conserved inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,609,975 | 0 | C | T | 100.0%
| 329.1
/ NA
| 97 | L254L (CTG→CTA) | yneE | conserved inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (53/44); total (53/44) |
ATCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCCAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTAA > W3110S.gb/1609921‑1610035
|
aTCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATcc > 1:790935/1‑64 (MQ=255)
aTCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCa > 1:1090900/1‑65 (MQ=255)
aTCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCa > 1:191807/1‑65 (MQ=255)
aTCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCa > 1:2421271/1‑65 (MQ=255)
aTCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCa > 1:1964853/1‑65 (MQ=255)
aTCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCa > 1:3734/1‑65 (MQ=255)
aTCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCa > 1:1661772/1‑65 (MQ=255)
aTCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCa > 1:826264/1‑65 (MQ=255)
aTCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCa > 1:1404805/1‑65 (MQ=255)
aTCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCa > 1:1991777/1‑65 (MQ=255)
aTCCAGTGGTAAATCATTGTTTTCAGTACCCAACGGATCTTCCAGTTCTTCCGCTAGACAATCCa > 1:2679779/1‑65 (MQ=255)
tCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCa > 1:1842817/1‑64 (MQ=255)
tCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCa > 1:2078406/1‑64 (MQ=255)
tCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTGCCAGTTCTTCCGCTAGACAATCCa > 1:1970034/1‑64 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:2171102/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:397099/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:2417801/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:2589177/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:1900505/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:1859252/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:2605858/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:920676/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:179405/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:793374/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:799916/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:836072/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:905751/65‑1 (MQ=255)
ttCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCAAAATAAAAGTGTAGGaaa < 1:1292119/65‑1 (MQ=255)
tCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:839656/64‑1 (MQ=255)
tCAGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:596188/64‑1 (MQ=255)
aGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATc < 1:283950/64‑1 (MQ=255)
aGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATc < 1:858945/64‑1 (MQ=255)
aGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATc < 1:246208/64‑1 (MQ=255)
aGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATc < 1:2935855/64‑1 (MQ=255)
aGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATc < 1:14335/64‑1 (MQ=255)
aGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATc < 1:1986354/64‑1 (MQ=255)
aGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATc < 1:2710535/64‑1 (MQ=255)
aGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATc < 1:1943060/64‑1 (MQ=255)
aGTACCGAACGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATc < 1:1759492/64‑1 (MQ=255)
cGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:110438/53‑1 (MQ=255)
cGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:2859509/53‑1 (MQ=255)
cGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:2787275/53‑1 (MQ=255)
cGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:30099/53‑1 (MQ=255)
cGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:404662/53‑1 (MQ=255)
cGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:89690/53‑1 (MQ=255)
cGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:890632/53‑1 (MQ=255)
cGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:223313/53‑1 (MQ=255)
cGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:577447/53‑1 (MQ=255)
cGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:1377389/53‑1 (MQ=255)
cGGATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:802325/53‑1 (MQ=255)
gATCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGaaa < 1:716059/51‑1 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCa > 1:77615/1‑52 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:3018280/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:3007053/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:40518/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:2931587/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:579406/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:102664/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:766785/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:1022137/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:2824583/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:2173310/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:1977471/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:1839089/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:2215308/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:1376728/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:1235888/1‑53 (MQ=255)
tCTTCCAGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAg > 1:1214452/1‑53 (MQ=255)
aGTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATc < 1:1136681/45‑1 (MQ=255)
gTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTc < 1:2407587/65‑1 (MQ=255)
gTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTc < 1:902000/65‑1 (MQ=255)
gTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTc < 1:1812886/65‑1 (MQ=255)
gTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTc < 1:2569439/65‑1 (MQ=255)
gTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTc < 1:205011/65‑1 (MQ=255)
gTTCTTCCGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTc < 1:1744521/65‑1 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:629742/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:1744596/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:1718694/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:1654372/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:1552013/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:1550601/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:914039/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:915138/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:1772117/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:623557/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:621567/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:212203/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:550724/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:2180654/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:2343044/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:236201/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:3046696/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:2469670/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:2487379/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:2893506/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTaa > 1:2597731/1‑64 (MQ=255)
cGCTAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTa > 1:2493519/1‑63 (MQ=255)
|
ATCCAGTGGTAAATCATTGTTTTCAGTACCGAACGGATCTTCCAGTTCTTCCGCCAGACAATCCAGCGAAATAAAAGTGTAGGAAATCAGCACAGAGATAAAAGGCGTCATGTAA > W3110S.gb/1609921‑1610035
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
