Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
354 |
41.7 |
3110465 |
93.1% |
2895842 |
61.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,274,249 |
A→G |
T64A (ACT→GCT) |
rtn → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,274,249 | 0 | A | G | 100.0%
| 201.8
/ NA
| 54 | T64A (ACT→GCT) | rtn | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (20/34); total (20/34) |
CACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGCCGCTGACCTTAGATACCTGCCAGCAAGCT > W3110S.gb/2274191‑2274296
|
cacacTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCgctact > 1:345955/1‑64 (MQ=255)
cacacTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTg > 1:1052736/1‑65 (MQ=255)
cacacTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTg > 1:2642483/1‑65 (MQ=255)
cacacTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTg > 1:1962785/1‑65 (MQ=255)
cacacTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTg > 1:721892/1‑65 (MQ=255)
cacacTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTg > 1:67672/1‑65 (MQ=255)
cacacTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTg > 1:1539468/1‑65 (MQ=255)
ttACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCgctact > 1:1610458/1‑56 (MQ=255)
ttACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGc > 1:568812/1‑63 (MQ=255)
ttACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGc > 1:2509895/1‑63 (MQ=255)
ttACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGc > 1:2393749/1‑63 (MQ=255)
ttACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGc > 1:2576639/1‑63 (MQ=255)
ttACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGc > 1:26523/1‑63 (MQ=255)
ttACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGc > 1:2861945/1‑63 (MQ=255)
ttACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGc > 1:587875/1‑63 (MQ=255)
ttACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGc > 1:1478571/1‑63 (MQ=255)
ttACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGc > 1:767155/1‑63 (MQ=255)
ttACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGc > 1:783406/1‑63 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:945645/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:936878/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:92261/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:2587992/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:870939/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:83668/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:2812418/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:2816520/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:2945682/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:302027/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:3051442/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:756843/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1043216/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:2343609/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1025895/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1108470/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:111694/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1187381/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1214174/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1451785/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1455382/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1484891/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1493936/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1523335/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1559527/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1582178/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:167889/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:1724622/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:2039891/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:2074348/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:2128322/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:2142797/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:2146949/65‑1 (MQ=255)
cAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGAc < 1:2214937/65‑1 (MQ=255)
tATCTCGATACCTATTTTGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGACCTTAGa > 1:1939845/1‑65 (MQ=255)
ttGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGACCTTAGATACCTGCCAGCAAGCt > 1:529414/1‑65 (MQ=255)
ttGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGACCTTAGATACCTGCCAGCAAGCt > 1:271593/1‑65 (MQ=255)
ttGCCGACCTGAAATCCGCTACTGACCGGCTCCAGCCGCTGACCTTAGATACCTGCCAGCAAGCt > 1:2386867/1‑65 (MQ=255)
|
CACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGCCGCTGACCTTAGATACCTGCCAGCAAGCT > W3110S.gb/2274191‑2274296
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
