Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,523,658 |
C→T |
Q153* (CAA→TAA) |
flk → |
predicted flagella assembly protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,523,658 | 0 | C | T | 100.0%
| 281.8
/ NA
| 81 | Q153* (CAA→TAA) | flk | predicted flagella assembly protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (57/24); total (57/24) |
ACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGCAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCT > minE/1523616‑1523725
|
aCCATTCTCACCCTGTTGCATGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:1004143/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:2720954/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:2545836/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:2252396/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:556982/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:596444/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:220393/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:682582/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:2019256/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:689296/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:694198/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:702510/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:1866715/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:1751669/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:1480790/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:1458672/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:813401/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:132754/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:885624/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:940365/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:1230233/71‑1 (MQ=255)
aCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:1206805/71‑1 (MQ=255)
ttCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:2721284/67‑1 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGcgaccga > 1:3196829/1‑54 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:3085202/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:406460/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:2832293/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:2808048/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:2741296/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:2725524/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:960055/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:314478/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:3176199/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:3285756/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:3299040/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:75911/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:488251/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:95628/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:680451/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:745025/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:1910202/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:2212661/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:2298436/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:2636443/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:2465999/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:1326697/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:2603881/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:2602067/1‑71 (MQ=255)
gTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcgg > 1:1323724/1‑71 (MQ=255)
agggaagATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGcac > 1:2880437/1‑70 (MQ=255)
aTTCCGTAACCACAGCAGCGCGAGGCGaccgaccg < 1:1037335/35‑1 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTgtatta > 1:599279/1‑42 (MQ=38)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcggc > 1:2540883/1‑47 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:1923873/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:221132/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:2162399/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:2155605/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:1981840/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:1237509/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:695505/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:347860/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:1900791/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:1788372/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:790268/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:1378240/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:543227/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:230167/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:2372020/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:2398434/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:2457358/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:314556/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:253719/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:3067039/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:2963230/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:2926587/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:2834587/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:2562924/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:280914/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:2594822/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:2787177/1‑71 (MQ=255)
ccGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCt > 1:2613102/1‑71 (MQ=255)
|
ACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGCAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCGGAGCACAATGCGCTAAAACAGCT > minE/1523616‑1523725
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
