Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,523,658 |
C→T |
Q153* (CAA→TAA) |
flk → |
predicted flagella assembly protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,523,658 | 0 | C | T | 100.0%
| 160.8
/ NA
| 47 | Q153* (CAA→TAA) | flk | predicted flagella assembly protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (33/14); total (33/14) |
TCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGCAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCG > minE/1523591‑1523702
|
tCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTaa > 1:603988/1‑70 (MQ=255)
tCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAAc > 1:1324525/1‑71 (MQ=255)
tCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAAc > 1:858888/1‑71 (MQ=255)
tCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAAc > 1:3002425/1‑71 (MQ=255)
tCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAAc > 1:136994/1‑71 (MQ=255)
tCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAAc > 1:668808/1‑71 (MQ=255)
tCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAAc > 1:1511796/1‑71 (MQ=255)
tCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAAc > 1:3011083/1‑71 (MQ=255)
tCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAAc > 1:3039446/1‑71 (MQ=255)
tCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAAc > 1:3509823/1‑71 (MQ=255)
tCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAAc > 1:3533599/1‑71 (MQ=255)
tCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAAc > 1:2419790/1‑71 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCGCAGCAgcgc > 1:2834775/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:3905262/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:4025252/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:4180549/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:50264/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:3245385/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:505088/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:543675/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:831425/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:971987/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:1354611/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:2734988/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:1486937/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:2211655/1‑70 (MQ=255)
ggAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAgcgc > 1:2506037/1‑70 (MQ=255)
tAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGcgacc > 1:1577180/1‑71 (MQ=255)
tAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGcgacc > 1:1582610/1‑71 (MQ=255)
tAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGcgacc > 1:2293793/1‑71 (MQ=255)
tAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGcgac > 1:4354741/1‑70 (MQ=255)
aaCCATTCTCAGCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCgaccgacc < 1:1782009/71‑1 (MQ=255)
aaCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCgaccgacc < 1:1297538/71‑1 (MQ=255)
aaCCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCgaccgacc < 1:3313304/71‑1 (MQ=255)
aCCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCttt < 1:3831950/68‑1 (MQ=255)
aCCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCttt < 1:2065395/68‑1 (MQ=255)
aCCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCttt < 1:4194007/68‑1 (MQ=255)
aCCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCttt < 1:2558863/68‑1 (MQ=255)
aCCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCttt < 1:3236230/68‑1 (MQ=255)
aCCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCttt < 1:3135264/68‑1 (MQ=255)
aCCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCttt < 1:2711930/68‑1 (MQ=255)
aCCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCttt < 1:1358063/68‑1 (MQ=255)
aCCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCttt < 1:2940765/68‑1 (MQ=255)
aCCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCttt < 1:2796030/68‑1 (MQ=255)
aCCCTGTTGCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGAGAGGCGACCGACCGTCCttt < 1:2007309/68‑1 (MQ=255)
gCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcggcg > 1:2466658/1‑70 (MQ=255)
gCAGGAAGGGAAGATGGTTATTCCGTAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACcggcg > 1:2634766/1‑70 (MQ=255)
|
TCAGCTCTCACCGGAGCAATTAAAAACCATTCTCACCCTGTTGCAGGAAGGGAAGATGGTTATTCCGCAACCACAGCAGCGCGAGGCGACCGACCGTCCTTTATTACCGGCG > minE/1523591‑1523702
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
