Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,536,834 |
C→T |
M1I (ATG→ATA) † |
yfcR ← |
predicted fimbrial‑like adhesin protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,536,834 | 0 | C | T | 100.0%
| 148.4
/ NA
| 45 | M1I (ATG→ATA) † | yfcR | predicted fimbrial‑like adhesin protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (8/37); total (8/37) |
CTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGC > minE/1536769‑1536899
|
cTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACT‑CCCCCGTTATCAGc < 1:2439766/71‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:2196259/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:41087/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:3217301/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:3096701/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:754333/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:3051624/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:2849963/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:2775693/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:2445621/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:2381420/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:2348825/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:2041817/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:1803448/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:150822/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:1014924/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:1262454/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:1357380/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:1362038/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:1411545/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:1476467/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:1492205/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:1716953/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:1607662/69‑1 (MQ=255)
cAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:1611409/69‑1 (MQ=255)
gACACTGCATACCTGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGc < 1:2763895/67‑1 (MQ=255)
ccAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCTTTGCGgctctgc < 1:1631632/70‑1 (MQ=255)
ccAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCTTTGCGgctctgc < 1:954526/70‑1 (MQ=255)
ccAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCTTTGCGgctctgc < 1:780075/70‑1 (MQ=255)
ccAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCTTTGCGgctctgc < 1:2249051/70‑1 (MQ=255)
ccAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCTTTGCGgctctgc < 1:1638803/70‑1 (MQ=255)
ccAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCTTTGCGgctctgc < 1:8647/70‑1 (MQ=255)
ccAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCTTTGCGgctctgc < 1:18978/70‑1 (MQ=255)
ccAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCTTTGCGgctctgc < 1:1648737/70‑1 (MQ=255)
ccTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCTTTGCGGCTCTGCTCTTCATc > 1:2822673/1‑70 (MQ=255)
ccTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCTTTGCGGCTCTGCTCTTCATc > 1:194168/1‑70 (MQ=255)
ccTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCTTTGCGGCTCTGCTCTTCATc > 1:669859/1‑70 (MQ=255)
aCTCCCCCCGTTATCAGCCTTTGCGGCTCTGCTCTTc > 1:804908/1‑37 (MQ=255)
aCTCCCCCCGTTATCAGCCTTTGCGGCTCTGCTCTTCa > 1:3196214/1‑38 (MQ=255)
aCTCCCCCCGTTATCAGCCTTTGCGGCTCTGCTCTTCa > 1:3172510/1‑38 (MQ=255)
aCTCCCCCCGTTATCAGCCTTTGCGGCTCTGCTCTTCa > 1:3061585/1‑38 (MQ=255)
aCTCCCCCCGTTATCAGCCTTTGCGGCTCTGCTCTTCa > 1:232781/1‑38 (MQ=255)
cccGTTATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGGTGTTGCCATTGCACTGGAAGAACAGc < 1:1225111/71‑1 (MQ=255)
cccGTTATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGc < 1:2333829/71‑1 (MQ=255)
cGTTATCAGCCTTTGCGCCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGc < 1:471733/69‑1 (MQ=255)
|
CTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGC > minE/1536769‑1536899
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
