Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,777,713 |
T→C |
N105D (AAT→GAT) |
trmD ← |
tRNA (guanine‑1‑)‑methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,777,713 | 0 | T | C | 100.0%
| 187.1
/ NA
| 51 | N105D (AAT→GAT) | trmD | tRNA (guanine‑1‑)‑methyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/51); total (0/51) |
ATCACGCGCTCATCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATTCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAT > minE/1777658‑1777773
|
aTCACGCGCTCATCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCt < 1:905817/71‑1 (MQ=255)
aTCACGCGCTCATCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCt < 1:1790/71‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:2572841/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:2624361/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:2259346/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:2235492/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:2698685/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:2195679/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:2193506/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:2180061/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:273497/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:2748424/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:1937395/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:1935755/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:2920292/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:1676830/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:3045183/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:1436470/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:430045/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:637794/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:726572/69‑1 (MQ=255)
aTCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCCTTGCCAGTTCGCTGACGCCCGc < 1:2910939/69‑1 (MQ=255)
tCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:2720449/68‑1 (MQ=255)
tCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:936437/68‑1 (MQ=255)
gacagCAGAATCAATTTTTGATCCGTTGCCAGTTCGCTGACGCCCGc < 1:2138846/46‑1 (MQ=38)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCGCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:1550316/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:304799/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:1056139/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:926531/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:134060/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:900155/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:893514/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:811658/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:776894/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:1360027/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:650483/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:137539/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:1433476/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:359858/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:333115/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:2527258/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:2985550/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:1679514/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:2016996/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:2882738/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:2830680/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:2176397/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:2180787/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:2210069/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:2435926/71‑1 (MQ=255)
aaTTTTTGATCCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAt < 1:2446036/71‑1 (MQ=255)
|
ATCACGCGCTCATCTATACCTTCGTAGCGACCGCACACCAGAATCAATTTTTGATTCGTTGCCAGTTCGCTGACGCCCGCTTGATCAAGCTTGCGTCCCTGTGGTGACAGATAAAT > minE/1777658‑1777773
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
