Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,833,531 |
C→T |
R92C (CGC→TGC) |
ygbL → |
predicted class II aldolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,833,531 | 0 | C | T | 100.0%
| 299.6
/ NA
| 90 | R92C (CGC→TGC) | ygbL | predicted class II aldolase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (56/34); total (56/34) |
GTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCT > minE/1833495‑1833595
|
gTGCTCTTTCATCTGGCGCTGTTTCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:215218/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCggtg > 1:2058184/1‑51 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTTGTGCATTTGCACAGCACATg < 1:2479285/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTgcacagcac > 1:1096451/1‑68 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTTCACAGCACATg > 1:870989/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:3101928/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:2362712/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:2973913/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:2966242/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:2865297/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:2815457/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:2795381/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:2668976/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:265696/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:2578628/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:2557871/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:2543873/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:2531215/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:999924/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:431301/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:1006568/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:940988/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:890009/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:853730/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:647782/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:635445/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:632523/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:580958/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:3117216/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:426051/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:414753/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:400209/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:380930/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:37834/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:342296/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:327315/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:1983679/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:1708995/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:1841890/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:1912306/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:1536698/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:1439642/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:1396162/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:139469/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:2000546/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:1386298/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:2063236/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:1357290/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:1352841/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:2243915/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:1225593/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:1195377/71‑1 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:2294447/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg > 1:1187695/1‑71 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGCTGGTGCATTTGCACAGCACAt > 1:882003/1‑70 (MQ=255)
gTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGCAAAGCGGTGGTGCATTTGCACAGCACATg < 1:368948/71‑1 (MQ=255)
tGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:1975495/70‑1 (MQ=255)
tGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:1940777/70‑1 (MQ=255)
tGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:1622418/70‑1 (MQ=255)
tCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGc > 1:1732441/1‑39 (MQ=255)
tCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACgg > 1:1773580/1‑71 (MQ=255)
tCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACgg > 1:900445/1‑71 (MQ=255)
tCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACgg > 1:3087667/1‑71 (MQ=255)
tCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACgg > 1:817977/1‑71 (MQ=255)
tCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACgg > 1:1675964/1‑71 (MQ=255)
tCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACgg > 1:2934985/1‑71 (MQ=255)
tCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACgg > 1:14676/1‑71 (MQ=255)
tCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACgg > 1:439060/1‑71 (MQ=255)
tCATCTGGCGCTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACgg > 1:19804/1‑71 (MQ=255)
gcgcTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCttt < 1:232890/70‑1 (MQ=255)
gcgcTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCttt < 1:2210236/70‑1 (MQ=255)
gcgcTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCttt < 1:2612149/70‑1 (MQ=255)
gcgcTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCttt < 1:2742929/70‑1 (MQ=255)
gcgcTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCttt < 1:599766/70‑1 (MQ=255)
gcgcTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCttt < 1:2827849/70‑1 (MQ=255)
gcgcTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCttt < 1:2965922/70‑1 (MQ=255)
gcgcTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCAATTGCACAGCACATGGTCGACGGCGCttt < 1:1701097/70‑1 (MQ=255)
gcgcTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGGGCATTTGCACAGCACATGGTCGACGGCGCttt < 1:2441074/70‑1 (MQ=255)
cTGTATCGCAACAATCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCttt < 1:893700/67‑1 (MQ=255)
caacaaTCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATg < 1:209939/45‑1 (MQ=255)
aaTCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGCCGGCGCTTTCCTGCCTGCAAGGGCt > 1:2390768/1‑71 (MQ=255)
aaTCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCt > 1:514007/1‑71 (MQ=255)
aaTCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCt > 1:648848/1‑71 (MQ=255)
aaTCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCt > 1:696960/1‑71 (MQ=255)
aaTCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCt > 1:3035861/1‑71 (MQ=255)
aaTCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCt > 1:2149551/1‑71 (MQ=255)
aaTCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCt > 1:1301654/1‑71 (MQ=255)
aaTCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCt > 1:2306914/1‑71 (MQ=255)
aaTCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCt > 1:3173740/1‑71 (MQ=255)
aaTCCGTGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCt > 1:1779329/1‑71 (MQ=255)
|
GTGCTCTTTCATCTGGCGCTGTATCGCAACAATCCGCGCTGTAAAGCGGTGGTGCATTTGCACAGCACATGGTCGACGGCGCTTTCCTGCCTGCAAGGGCT > minE/1833495‑1833595
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
