Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,371,447 |
A→G |
F214L (TTT→CTT) |
fre ← |
flavin reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,371,447 | 0 | A | G | 100.0%
| 140.6
/ NA
| 38 | F214L (TTT→CTT) | fre | flavin reductase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (2/36); total (2/36) |
ATGCAAACGCATCGCCAAACAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAACAGATCGCGGGCAATTTTCGCCATCTCAAAACGTCCGGCAATATAGATATCATGCTCTGCCAGCG > minE/2371393‑2371512
|
aTGCAAACGCATCGCCAAACAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAAtt < 1:320036/71‑1 (MQ=255)
gCCAAACAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCaa < 1:461594/71‑1 (MQ=255)
gCCAAACAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCaa < 1:454347/71‑1 (MQ=255)
gCCAAACAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCaa < 1:1829200/71‑1 (MQ=255)
gCCAAACAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCaa < 1:373905/71‑1 (MQ=255)
gCCAAACAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCaa < 1:1905149/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTGAAAAc < 1:803491/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCaaagc < 1:2446023/71‑3 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:2961498/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:1143046/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:310535/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:3190242/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:3284314/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:3293600/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:489492/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:529781/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:529784/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:642933/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:847941/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:966406/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:1788207/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:114217/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:1413639/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:1509239/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:1573201/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:1637918/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:1703149/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:1782990/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:2846987/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:1866546/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:2025950/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:2072704/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:2504330/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:2599563/71‑1 (MQ=255)
aaaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:2636267/71‑1 (MQ=255)
aaCAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAAc < 1:392383/70‑1 (MQ=255)
cAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAACGTCCGGCAATATAGATATCATGCTCTGCCAGCg > 1:1329825/1‑70 (MQ=255)
cAAAGCAGATCGCGGGCAATTTTCGCCATCTCAAAACGTCCGGCAATATAGATATCATGCTCTGCCAGCg > 1:2692128/1‑70 (MQ=255)
|
ATGCAAACGCATCGCCAAACAGGCGATCTTCCCGCGCATTACGCTCACTGCAAAACAGATCGCGGGCAATTTTCGCCATCTCAAAACGTCCGGCAATATAGATATCATGCTCTGCCAGCG > minE/2371393‑2371512
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
