Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R2
|
356 |
55.1 |
4139924 |
95.4% |
3949487 |
63.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
644,447 |
C→T |
G453S (GGC→AGC) |
citT ← |
citrate:succinate antiporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 644,447 | 0 | C | T | 100.0%
| 137.5
/ NA
| 42 | G453S (GGC→AGC) | citT | citrate:succinate antiporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (37/5); total (37/5) |
ACATAGAGATGTAAATCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCCACAGCCGTAAATAATCACCCCAGGACCGGTTGCATACGGCGTCAGACAGCCCAT > W3110S.gb/644381‑644501
|
aCATAGAGATGTAAATCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAg > 1:477969/1‑71 (MQ=255)
aTGTAAATCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTaaa > 1:3201095/1‑70 (MQ=255)
aTGTAAATCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTaaa > 1:2564535/1‑70 (MQ=255)
tAAATCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAaataat > 1:1515060/1‑71 (MQ=255)
aaTCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCa > 1:292170/1‑71 (MQ=255)
aaTCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCa > 1:844776/1‑71 (MQ=255)
aaTCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCa > 1:820413/1‑71 (MQ=255)
aaTCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCa > 1:802539/1‑71 (MQ=255)
aaTCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCa > 1:801765/1‑71 (MQ=255)
aaTCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCa > 1:252494/1‑71 (MQ=255)
aaTCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCa > 1:2418190/1‑71 (MQ=255)
aaTCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCa > 1:1935594/1‑71 (MQ=255)
cacaCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAcac > 1:2348719/1‑69 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACTGCCGTAAATAATCAccc > 1:802430/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:1955659/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:1093949/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:1163189/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:1567714/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:3651998/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:2174753/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:3124003/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:3104648/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:2859449/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:2209203/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:239813/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:2097095/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:2686553/1‑71 (MQ=255)
cACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCAccc > 1:1041798/1‑71 (MQ=255)
gcgcCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTg < 1:352235/70‑1 (MQ=255)
gcgcCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTg < 1:2051118/70‑1 (MQ=255)
gcgcCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTg < 1:431233/70‑1 (MQ=255)
gcgcCAAGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTg < 1:723296/70‑1 (MQ=255)
aGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTGCATACgg > 1:3238473/1‑71 (MQ=255)
aGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTGCATACgg > 1:3727813/1‑71 (MQ=255)
aGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTGCATACgg > 1:407352/1‑71 (MQ=255)
aGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTGCATACgg > 1:472853/1‑71 (MQ=255)
aGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTGCATACgg > 1:1784950/1‑71 (MQ=255)
aGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTGCATACgg > 1:2241959/1‑71 (MQ=255)
aGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTGCATACg > 1:56679/1‑70 (MQ=255)
aGACGCCAGTAATCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTGCATACg > 1:3127261/1‑70 (MQ=255)
tCTTTTGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTGCATACGGCGTCAGACAGcc > 1:3174507/1‑71 (MQ=255)
ttGATTTCACATAGCTACAGCCGTAAATAATCACCCCAGGACCGGTTGCATACGGCGTCAGACAGCCCAt < 1:2072645/70‑1 (MQ=255)
|
ACATAGAGATGTAAATCACCCCGAAGATTGCGCCAAGACGCCAGTAATCTTTTGATTTCACATAGCCACAGCCGTAAATAATCACCCCAGGACCGGTTGCATACGGCGTCAGACAGCCCAT > W3110S.gb/644381‑644501
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
