Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R2
|
356 |
55.1 |
4139924 |
95.4% |
3949487 |
63.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,100,581 |
C→T |
C70Y (TGC→TAC) |
yggL ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,100,581 | 0 | C | T | 100.0%
| 222.8
/ NA
| 69 | C70Y (TGC→TAC) | yggL | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (44/25); total (44/25) |
GCGCTCTTCCAGCCACTTACGCACAATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGCAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGATAACCTC > W3110S.gb/3100514‑3100648
|
gcgcTCTTCCAGCCACTTACGCACAATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAg < 1:927248/70‑1 (MQ=255)
gcgcTCTTCCAGCCACTTACGCACAATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAg < 1:1367130/70‑1 (MQ=255)
gcgcTCTTCCAGCCACTTACGCACAATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAg < 1:313673/70‑1 (MQ=255)
gcgcTCTTCCAGCCACTTACGCACAATCGCCTGATGTACTTCGGTGCATTTGCCGATTTCATGCATGTAg < 1:2959303/70‑1 (MQ=255)
ttCCAGCCACTTACGCACAATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATCAg < 1:1921454/69‑1 (MQ=255)
ttCCAGCCACTTACGCACAATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATCAg < 1:3798052/69‑1 (MQ=255)
cacaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGAt > 1:238070/1‑51 (MQ=255)
cacaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATc > 1:1077934/1‑52 (MQ=255)
cacaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATc > 1:2042936/1‑52 (MQ=255)
cacaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATc > 1:3229047/1‑52 (MQ=255)
cacaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATc > 1:1864284/1‑52 (MQ=255)
cacaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATc > 1:4067129/1‑52 (MQ=255)
cacaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATc > 1:839511/1‑52 (MQ=255)
cacaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATc > 1:925605/1‑52 (MQ=255)
acaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATa < 1:3401174/71‑1 (MQ=255)
acaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATa < 1:554098/71‑1 (MQ=255)
acaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATa < 1:2254423/71‑1 (MQ=255)
acaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATa < 1:2906376/71‑1 (MQ=255)
acaATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATa < 1:2454040/71‑1 (MQ=255)
gCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCt > 1:1820512/1‑71 (MQ=255)
gCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCt > 1:647471/1‑71 (MQ=255)
gCCTGATGTTCTTCGGTGCAGTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCt > 1:1910285/1‑71 (MQ=255)
tcttcGGTGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCa > 1:401726/1‑69 (MQ=255)
tGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCg < 1:812597/59‑1 (MQ=255)
tGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCg < 1:12916/59‑1 (MQ=255)
tGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCg < 1:1401104/59‑1 (MQ=255)
tGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCg < 1:2296240/59‑1 (MQ=255)
tGCATTTGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCg < 1:1513803/59‑1 (MQ=255)
tttGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAg > 1:60294/1‑42 (MQ=255)
tttGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgt > 1:1330301/1‑71 (MQ=255)
tttGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgt > 1:1415766/1‑71 (MQ=255)
tttGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgt > 1:3340886/1‑71 (MQ=255)
tttGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgt > 1:3435525/1‑71 (MQ=255)
tttGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgt > 1:4093977/1‑71 (MQ=255)
tttGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgt > 1:3465930/1‑71 (MQ=255)
tttGCCGATTTCCTGCATGTAGATCAGACCTTCACAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgt > 1:3373797/1‑71 (MQ=255)
tttGCCGATTTCCTGCATGTAGATCAGACCTTCACAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgt > 1:3368990/1‑71 (MQ=255)
tGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCg > 1:1674713/1‑47 (MQ=255)
tGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttc > 1:1900104/1‑71 (MQ=255)
tGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttc > 1:795387/1‑71 (MQ=255)
tGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttc > 1:962170/1‑71 (MQ=255)
tGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttc > 1:2322418/1‑71 (MQ=255)
tGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttc > 1:2180978/1‑71 (MQ=255)
tGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttc > 1:3332772/1‑71 (MQ=255)
tGCCGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttc > 1:2017636/1‑71 (MQ=255)
cGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttcggt < 1:3028155/71‑1 (MQ=255)
cGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttcggt < 1:3098626/71‑1 (MQ=255)
cGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttcggt < 1:514122/71‑1 (MQ=255)
cGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttcggt < 1:504418/71‑1 (MQ=255)
cGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttcggt < 1:3956936/71‑1 (MQ=255)
cGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttcggt < 1:1875950/71‑1 (MQ=255)
cGATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttcggt < 1:1859080/71‑1 (MQ=255)
gATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTTCCGTCAAAGGCCAGTTTgttcggtt > 1:394308/1‑71 (MQ=255)
gATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttcggtt > 1:3311937/1‑71 (MQ=255)
gATTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttcggt > 1:3250360/1‑70 (MQ=255)
aTTTCCTGCTTGTAGATCAGACCTTCCCAGGCCAGATa < 1:1306178/38‑1 (MQ=37)
aTTTCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTgttctgt < 1:3778011/69‑1 (MQ=255)
tCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGa > 1:1933514/1‑70 (MQ=255)
tCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGa > 1:3736750/1‑70 (MQ=255)
tCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGa > 1:3705944/1‑70 (MQ=255)
tCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGa > 1:586976/1‑70 (MQ=255)
tCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGa > 1:351928/1‑70 (MQ=255)
tCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGa > 1:3517075/1‑70 (MQ=255)
tCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGa > 1:768288/1‑70 (MQ=255)
tCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGa > 1:1916514/1‑70 (MQ=255)
tCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGa > 1:2921578/1‑70 (MQ=255)
tCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGa > 1:2789570/1‑70 (MQ=255)
tCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGa > 1:2523790/1‑70 (MQ=255)
tCCTGCATGTAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTAGGTTCGa > 1:2416346/1‑70 (MQ=255)
atgtaGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGATAACCTc < 1:343007/71‑1 (MQ=255)
|
GCGCTCTTCCAGCCACTTACGCACAATCGCCTGATGTTCTTCGGTGCATTTGCCGATTTCCTGCATGCAGATCAGACCTTCCCAGGCCAGATAACCGCTGCCGTCAAAGGCCAGTTTGTTCGGTTCGATAACCTC > W3110S.gb/3100514‑3100648
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
