Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F21 I0 R2 308 27.9 1975068 96.7% 1909890 67.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC W3110S.gb 3,750,593 Δ1,199 bp 100% insH insH

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ W3110S.gb 3750593–3751789 3751791 3–1199 58 [0] [0] 58 insH insH

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 37505920 (0.000)45 (2.090) 8/104 NT 100% intergenic (‑104/‑69) tnaA/insH tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein
?W3110S.gb 3751792 = 0 (0.000)intergenic (+151/+116) insH/tnaC IS5 element protein/tryptophanase leader peptide

GATK/CNVnator alignment

N/A