Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F8 I0 R2
|
422 |
46.8 |
3726540 |
94.7% |
3529033 |
61.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
W3110S.gb |
3,750,593 |
Δ1,199 bp |
100% |
|
insH |
insH |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
W3110S.gb |
3750593–3751790 |
3751791 |
2–1199 |
81 [0] |
[0] 78 |
insH |
insH |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
W3110S.gb |
= 3750592 | 0 (0.000) | 56 (1.570) |
20/94 |
NT |
100% |
intergenic (‑104/‑69) |
tnaA/insH |
tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb |
3751792 = |
0 (0.000) | intergenic (+151/+116) |
insH/tnaC |
IS5 element protein/tryptophanase leader peptide |
GATK/CNVnator alignment
N/A
