Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I0 R1
|
92 |
46.1 |
3712835 |
96.9% |
3597737 |
60.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
W3110S.gb |
3,750,593 |
Δ1,199 bp |
100% |
|
insH |
insH |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
W3110S.gb |
3750593–3751791 |
3751791 |
1–1199 |
107 [0] |
[0] 105 |
insH |
insH |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
W3110S.gb |
= 3750592 | 0 (0.000) | 81 (2.300) |
51/90 |
NT |
100% |
intergenic (‑104/‑69) |
tnaA/insH |
tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb |
3751792 = |
0 (0.000) | intergenic (+151/+116) |
insH/tnaC |
IS5 element protein/tryptophanase leader peptide |
GATK/CNVnator alignment
N/A
