Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I3 R2
|
122 |
64.1 |
3058059 |
97.6% |
2984665 |
63.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,231,014 |
C→T |
G581D (GGT→GAT) |
ptrB ← |
protease II |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,231,014 | 0 | C | T | 100.0%
| 150.3
/ NA
| 50 | G581D (GGT→GAT) | ptrB | protease II |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (21/29); total (21/29) |
TGCGGTGACGTTGTCATACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTACCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCGTTGTTACAACATCAA > minE/1230947‑1231080
|
tgCGGTGACGTTGTCATACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTAtcc < 1:1119284/70‑1 (MQ=255)
cGGTGACGTTGTCATACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCAc > 1:2210289/1‑71 (MQ=255)
tGACGTTGTCATACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCActct < 1:2451602/71‑1 (MQ=255)
tGACGTTGTCATACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCActct < 1:1097293/71‑1 (MQ=255)
cGTTGTCATACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCa < 1:2675826/71‑1 (MQ=255)
tGTCATACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCaaa > 1:179844/1‑70 (MQ=255)
tGTCATACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAAc > 1:2617599/1‑71 (MQ=255)
tGTCATACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAAc > 1:1263846/1‑71 (MQ=255)
gTCATACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCtt > 1:478809/1‑65 (MQ=255)
gTCATACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACt > 1:2949214/1‑71 (MQ=255)
aTACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCAc < 1:156173/71‑1 (MQ=255)
ggCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTg < 1:1734370/71‑1 (MQ=255)
gCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACt > 1:2864884/1‑56 (MQ=255)
gCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAagag > 1:2904837/1‑71 (MQ=255)
gCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAagag > 1:443777/1‑71 (MQ=255)
gCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAagag < 1:2292313/71‑1 (MQ=255)
gCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAaga < 1:1916449/70‑1 (MQ=255)
cTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAgg < 1:959895/71‑1 (MQ=255)
cATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAAtt < 1:560344/70‑1 (MQ=255)
cATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAAtt < 1:223972/70‑1 (MQ=255)
cATGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAAtt > 1:2723222/1‑70 (MQ=255)
aTGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGa < 1:2164927/71‑1 (MQ=255)
aTGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGa < 1:2726978/71‑1 (MQ=255)
tGTACTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGAt < 1:1057251/71‑1 (MQ=255)
cTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATtca < 1:2161720/70‑1 (MQ=255)
cTCGTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATtca < 1:620318/70‑1 (MQ=255)
gTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATtcatc > 1:2460207/1‑69 (MQ=255)
gTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATtcatc < 1:650787/69‑1 (MQ=255)
gTAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATtcatc < 1:2071247/69‑1 (MQ=255)
tAATATTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAg > 1:9002/1‑71 (MQ=255)
atatTGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGc < 1:2116513/70‑1 (MQ=255)
ttGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCa > 1:2781559/1‑40 (MQ=255)
ttGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGTAATTGATTCATCAAGCATc < 1:2795913/70‑1 (MQ=255)
ttGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATtca < 1:958700/61‑1 (MQ=255)
ttGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATc < 1:2109378/70‑1 (MQ=255)
ttGCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCg > 1:1554721/1‑71 (MQ=255)
gCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAAtt < 1:1063160/53‑1 (MQ=255)
gCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCgt < 1:441489/70‑1 (MQ=255)
gCGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCgt < 1:954064/70‑1 (MQ=255)
cGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCa > 1:884176/1‑37 (MQ=255)
cGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCgttg < 1:1180885/71‑1 (MQ=255)
cGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCgttg > 1:2635757/1‑71 (MQ=255)
cGGATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCgttg > 1:2632225/1‑71 (MQ=255)
ggATCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCgttgt > 1:2429800/1‑71 (MQ=255)
tCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGAt < 1:951598/51‑1 (MQ=255)
tCCTGCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCGTTGTTac < 1:946034/71‑1 (MQ=255)
gCGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCGTTGTTacaaca > 1:2887252/1‑71 (MQ=255)
cGGGTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCGTTGTTacaaca < 1:870506/70‑1 (MQ=255)
ggTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCGTTGTTACAACATca < 1:2542824/71‑1 (MQ=255)
ggTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCGTTGTTACAACATc > 1:1072048/1‑70 (MQ=255)
gTTATCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCGTTGTTACAACATcaa > 1:227334/1‑71 (MQ=255)
|
TGCGGTGACGTTGTCATACGGGCTGTAGCTTTTCATGTACTCGTAATATTGCGGATCCTGCGGGTTACCCCACTCTTCAAACTCACCAGTGGTAAGAGGAATTGATTCATCAAGCATCGTTGTTACAACATCAA > minE/1230947‑1231080
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
