Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R2
|
328 |
63.0 |
4687567 |
98.0% |
4593815 |
65.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,436,722 |
T→C |
intergenic (‑751/+177) |
ynaE ← / ← uspF |
predicted DNA‑binding transcriptional regulator/stress‑induced protein, ATP‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,436,722 | 0 | T | C | 100.0%
| 228.7
/ NA
| 67 | intergenic (‑751/+177) | ynaE/uspF | predicted DNA‑binding transcriptional regulator/stress‑induced protein, ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (21/46); total (21/46) |
TGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCAT > W3110S.gb/1436655‑1436787
|
tgtgATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACActt > 1:609884/1‑70 (MQ=255)
gtgATTTTTGCCCTTACTTGTTCAGTTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTa > 1:2391091/1‑70 (MQ=255)
gtgATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTa > 1:1151351/1‑70 (MQ=255)
gtgATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTa > 1:803720/1‑70 (MQ=255)
gtgATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTa > 1:3571868/1‑70 (MQ=255)
gtgATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTa > 1:4053772/1‑70 (MQ=255)
aTTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAg > 1:2591767/1‑71 (MQ=255)
aTTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAg > 1:1490587/1‑71 (MQ=255)
tttttGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGc < 1:3744209/71‑1 (MQ=255)
aCTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTc < 1:10954/70‑1 (MQ=255)
cTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGt < 1:3877791/71‑1 (MQ=255)
ttGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCaa > 1:2257894/1‑65 (MQ=255)
gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:1588171/70‑1 (MQ=255)
gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:1539215/70‑1 (MQ=255)
gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:3656538/70‑1 (MQ=255)
gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:4058567/70‑1 (MQ=255)
gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:3527896/70‑1 (MQ=255)
gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:1846666/70‑1 (MQ=255)
gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:4648550/70‑1 (MQ=255)
gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:1927296/70‑1 (MQ=255)
gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:314791/70‑1 (MQ=255)
gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:777365/70‑1 (MQ=255)
gTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:1285943/70‑1 (MQ=255)
ttCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:3206870/69‑1 (MQ=255)
ggTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:3024537/65‑1 (MQ=255)
gTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCg < 1:222796/51‑1 (MQ=255)
gTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGTCTCAATTCGt < 1:3698983/62‑1 (MQ=255)
gTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:1645663/64‑1 (MQ=255)
gTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta < 1:1295008/64‑1 (MQ=255)
tGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCaa > 1:3665274/1‑55 (MQ=255)
tGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTtata > 1:3322964/1‑64 (MQ=255)
ttGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGt < 1:539529/56‑1 (MQ=255)
ttGTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCaga < 1:4259852/70‑1 (MQ=255)
gTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTtata > 1:1733811/1‑58 (MQ=255)
gTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTtata > 1:4044394/1‑58 (MQ=255)
gTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTtata > 1:2461367/1‑58 (MQ=255)
gTTCTTTCTTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCagaa > 1:3369097/1‑69 (MQ=255)
ttctttctTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCATAagag < 1:1344060/71‑1 (MQ=255)
ttctttctTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag < 1:625108/71‑1 (MQ=255)
ttctttctTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag < 1:4331359/71‑1 (MQ=255)
ttctttctTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag < 1:4194752/71‑1 (MQ=255)
ttctttctTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag < 1:2144657/71‑1 (MQ=255)
ttctttctTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag < 1:1687012/71‑1 (MQ=255)
ttctttctTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag < 1:184530/71‑1 (MQ=255)
ttctttctTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag < 1:627563/71‑1 (MQ=255)
ttctttctTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag < 1:3344193/71‑1 (MQ=255)
ttctttctTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag < 1:2608895/71‑1 (MQ=255)
ttctttctTACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag < 1:2036289/71‑1 (MQ=255)
tctttcttACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag < 1:1338335/70‑1 (MQ=255)
ctttcttACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTta > 1:185631/1‑53 (MQ=255)
ctttcttACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTa > 1:1939168/1‑71 (MQ=255)
tcttACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTa < 1:4221488/68‑1 (MQ=255)
cttACTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGc < 1:2604795/70‑1 (MQ=255)
aCTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGt < 1:2497011/69‑1 (MQ=255)
cTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGTCATCAGAAGAGTATGCGt < 1:904593/68‑1 (MQ=255)
cTAATTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGt < 1:4375731/68‑1 (MQ=255)
aaTTTCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGc > 1:1579029/1‑71 (MQ=255)
tCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGc < 1:4022327/45‑1 (MQ=255)
tCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTa > 1:2745968/1‑57 (MQ=255)
tCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCgg > 1:3955124/1‑70 (MQ=255)
tCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCgg < 1:1604274/70‑1 (MQ=255)
tCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCgg < 1:1301550/70‑1 (MQ=255)
tCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCgg > 1:333560/1‑70 (MQ=255)
tCTTGATTTTGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCgg < 1:882576/70‑1 (MQ=255)
tttGCGACACTTAAAAGCGACTCAATTCGTTATATGGCATCagaa > 1:3357193/1‑45 (MQ=255)
cGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAagag < 1:3829868/44‑1 (MQ=255)
cGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCAt < 1:1423282/71‑1 (MQ=255)
cGACACTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCAt < 1:785448/71‑1 (MQ=255)
|
TGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCAT > W3110S.gb/1436655‑1436787
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
