Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R2
|
328 |
63.0 |
4687567 |
98.0% |
4593815 |
65.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,027,474 |
(T)7→6 |
intergenic (+124/‑174) |
yodD → / → yedP |
hypothetical protein/conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,027,468 | 0 | T | . | 100.0%
| 262.3
/ NA
| 65 | intergenic (+118/‑180) | yodD/yedP | hypothetical protein/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (24/41); total (24/41) |
CAAGAAGCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGA > W3110S.gb/2027405‑2027534
|
cAAGAAGCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAAttttttcg > 1:1801490/1‑69 (MQ=255)
cAAGAAGCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAAttttttcg > 1:2536648/1‑69 (MQ=255)
aagCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGa > 1:2781687/1‑71 (MQ=255)
gCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGAc > 1:1134528/1‑70 (MQ=255)
tAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGaa > 1:4423233/1‑70 (MQ=255)
tAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGa > 1:4095398/1‑69 (MQ=255)
aaaaaTTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGaaaa < 1:4663613/70‑1 (MQ=255)
aaaaTTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAata < 1:4302933/71‑1 (MQ=255)
ttCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGaaaa < 1:3961883/65‑1 (MQ=255)
cGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGc < 1:4049668/70‑1 (MQ=255)
cGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGc > 1:3657044/1‑70 (MQ=255)
gTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCa < 1:4182161/71‑1 (MQ=255)
gTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCa < 1:4301798/71‑1 (MQ=255)
gTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCa < 1:3807127/71‑1 (MQ=255)
ttACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCat < 1:784901/71‑1 (MQ=255)
acacCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCatat > 1:1675627/1‑71 (MQ=255)
acacCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCatat > 1:2535173/1‑71 (MQ=255)
acacCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCatat > 1:3428253/1‑71 (MQ=255)
cacCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATatg < 1:3549993/71‑1 (MQ=255)
cacCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATatg < 1:2188064/71‑1 (MQ=255)
cacCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATatg < 1:708239/71‑1 (MQ=255)
acCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGaaa < 1:4342962/56‑1 (MQ=255)
acCAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTATTCGCTGACAAGaaa < 1:4070657/56‑1 (MQ=255)
cAGGAAATCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATatgaat < 1:2568086/71‑1 (MQ=255)
aaaTCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGAtt < 1:2205314/71‑1 (MQ=255)
aaaTCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGAtt < 1:4072375/71‑1 (MQ=255)
aaaTCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGAtt < 1:2011141/71‑1 (MQ=255)
aaaTCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGAtt < 1:389613/71‑1 (MQ=255)
aaaTCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGAtt < 1:1741143/71‑1 (MQ=255)
aaTCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGAtt > 1:2126992/1‑70 (MQ=255)
aaTCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGAtt > 1:1252494/1‑70 (MQ=255)
aaTCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTa < 1:1062262/71‑1 (MQ=255)
aTCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGaaaa < 1:3449914/49‑1 (MQ=39)
tCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGaaaa < 1:2793689/48‑1 (MQ=39)
tCTGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAata < 1:3834779/50‑1 (MQ=39)
tGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATAtt > 1:444521/1‑50 (MQ=39)
tGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTaa > 1:4369695/1‑68 (MQ=255)
tGATGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTaa > 1:1768848/1‑68 (MQ=255)
aTGTGTTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCt < 1:3316345/70‑1 (MQ=255)
tgtTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGaaaa < 1:4316497/41‑1 (MQ=38)
tgtTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACt < 1:3473187/70‑1 (MQ=255)
tgtTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACt < 1:3760310/70‑1 (MQ=255)
tgtTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACt < 1:1345544/70‑1 (MQ=255)
tgtTCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGACATATGAATGATTAAGGCTACt > 1:2565467/1‑70 (MQ=255)
ttCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCa < 1:461237/48‑1 (MQ=39)
ttCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATatgaa > 1:3257731/1‑54 (MQ=255)
ttCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATatgaa > 1:3190581/1‑54 (MQ=255)
ttCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATatg < 1:1838509/52‑1 (MQ=255)
ttCATCACCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTAt > 1:659190/1‑71 (MQ=255)
catcaCCTTATCCGCAA‑TTTTTTCGCTGACAAGaaaa < 1:2379850/37‑1 (MQ=37)
aCCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCg > 1:4656529/1‑39 (MQ=37)
aCCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGaa > 1:926730/1‑68 (MQ=255)
aCCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGaa > 1:2946565/1‑68 (MQ=255)
aCCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGaa > 1:1863257/1‑68 (MQ=255)
aCCTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGaa > 1:153493/1‑68 (MQ=255)
ccTTATCCTCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGa < 1:1100596/71‑1 (MQ=255)
ccTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGa < 1:3853313/71‑1 (MQ=255)
ccTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGa < 1:1560017/71‑1 (MQ=255)
cTTATCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTaa < 1:2270990/53‑1 (MQ=255)
aTCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGaaa < 1:3326052/69‑1 (MQ=255)
tCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAAtgt < 1:261354/71‑1 (MQ=255)
tCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAAtgt < 1:164513/71‑1 (MQ=255)
tCCGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTACGAATAGAAAtgt < 1:3009932/71‑1 (MQ=255)
cGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAAtgtg < 1:4053169/70‑1 (MQ=255)
cGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAAtgtg < 1:2978479/70‑1 (MQ=255)
cGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGa > 1:2708140/1‑71 (MQ=255)
cGCAA‑TTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGa > 1:702121/1‑71 (MQ=255)
|
CAAGAAGCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGA > W3110S.gb/2027405‑2027534
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
