Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R2
|
328 |
63.0 |
4687567 |
98.0% |
4593815 |
65.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,136,226 |
T→C |
D318G (GAT→GGT) |
gss ← |
fused glutathionylspermidine amidase and glutathionylspermidine synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,136,226 | 0 | T | C | 100.0%
| 309.2
/ NA
| 88 | D318G (GAT→GGT) | gss | fused glutathionylspermidine amidase and glutathionylspermidine synthetase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (54/34); total (54/34) |
ACAGGAGGCGGAGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAATCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGCCAGAGGA > W3110S.gb/3136165‑3136292
|
aCAGGAGGCGGAGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGAc > 1:2163938/1‑71 (MQ=255)
aCAGGAGGCGGAGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGAc > 1:407211/1‑71 (MQ=255)
aggCGGAGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGt > 1:1926295/1‑70 (MQ=255)
ggCGGAGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGa > 1:680984/1‑71 (MQ=255)
ggAGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa < 1:1226699/71‑1 (MQ=255)
ggAGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa < 1:749108/71‑1 (MQ=255)
ggAGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa < 1:3465744/71‑1 (MQ=255)
gAGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa > 1:4417637/1‑70 (MQ=255)
gAGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa < 1:2883646/70‑1 (MQ=255)
aGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa < 1:1526794/69‑1 (MQ=255)
aGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa < 1:3353633/69‑1 (MQ=255)
aGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa < 1:1578106/69‑1 (MQ=255)
tCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATg > 1:3680548/1‑71 (MQ=255)
ggCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGt > 1:4198259/1‑71 (MQ=255)
ggCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGt < 1:4142178/71‑1 (MQ=255)
ggCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGt > 1:352240/1‑71 (MQ=255)
gCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa < 1:655130/64‑1 (MQ=255)
gCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa < 1:1727037/64‑1 (MQ=255)
gTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCata > 1:4585694/1‑64 (MQ=255)
gTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGAc > 1:940999/1‑71 (MQ=255)
gTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGAc > 1:1125218/1‑71 (MQ=255)
gTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTCATCATATGGTGAc < 1:4290879/71‑1 (MQ=255)
ttGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGAt < 1:3853350/59‑1 (MQ=255)
ttGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGAt < 1:130347/59‑1 (MQ=255)
ttGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGAt < 1:2185802/59‑1 (MQ=255)
ttGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTg < 1:316148/68‑1 (MQ=255)
ttGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGa > 1:2084883/1‑69 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCata > 1:3344196/1‑61 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa > 1:1666053/1‑59 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACgg > 1:4380693/1‑70 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACgg > 1:294762/1‑70 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACgg > 1:463075/1‑70 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc > 1:4180589/1‑71 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc > 1:3988944/1‑71 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc > 1:3940844/1‑71 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc > 1:1478463/1‑71 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc > 1:3498012/1‑71 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc > 1:4460550/1‑71 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc > 1:1939307/1‑71 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc > 1:3139735/1‑71 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc > 1:2650257/1‑71 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc > 1:2168925/1‑71 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc > 1:785995/1‑71 (MQ=255)
gTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc > 1:2042156/1‑71 (MQ=255)
cTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGa > 1:2217832/1‑64 (MQ=255)
cTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGAc < 1:47195/71‑1 (MQ=255)
cTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGAc < 1:2760055/71‑1 (MQ=255)
cTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGAc < 1:1535391/71‑1 (MQ=255)
cTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGAc < 1:2624725/71‑1 (MQ=255)
cGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGAc > 1:4668079/1‑69 (MQ=255)
cGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACg > 1:572307/1‑70 (MQ=255)
cGTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGc > 1:4440294/1‑71 (MQ=255)
gTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCt > 1:1029402/1‑71 (MQ=255)
gTAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCt > 1:304005/1‑71 (MQ=255)
tAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa < 1:2372911/52‑1 (MQ=255)
tAAACCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCa < 1:3988194/52‑1 (MQ=255)
aaCCTTCAGGCCACGCTCATCCATGCAGAAACCCATAc > 1:3513915/1‑38 (MQ=255)
aaCCTTCAGGCCACGCTCATCCATGCAGAAACCCATAc > 1:357621/1‑38 (MQ=255)
aaCCTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGc > 1:4205183/1‑70 (MQ=255)
ccTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAg < 1:4312032/71‑1 (MQ=255)
cTTCAGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAg > 1:54341/1‑70 (MQ=255)
aGGCCAGGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGgaga < 1:187468/70‑1 (MQ=255)
aGGCCACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGgaga < 1:1505871/70‑1 (MQ=255)
cACGCTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACg > 1:1533171/1‑70 (MQ=255)
aCGCTCATCCATGCAGAAACCCATACGACCAGTGATCa < 1:1158464/38‑1 (MQ=255)
cTCATCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAAc > 1:3806009/1‑71 (MQ=255)
cATCCATGCAGAAACCCATACGACCAGTGATCATATgga > 1:817885/1‑38 (MQ=39)
tCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc < 1:667545/43‑1 (MQ=255)
tCCATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc < 1:3730774/43‑1 (MQ=255)
ccATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGc < 1:1556871/42‑1 (MQ=255)
cATGCAGAACCCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGc > 1:3068592/1‑70 (MQ=255)
cATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGa > 1:1531997/1‑43 (MQ=255)
cATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGa > 1:1486109/1‑43 (MQ=255)
cATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGc > 1:4254979/1‑70 (MQ=255)
cATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGc > 1:663291/1‑70 (MQ=255)
cATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGc > 1:3898621/1‑70 (MQ=255)
cATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGc > 1:333219/1‑70 (MQ=255)
cATGCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACG‑AAACGTGGc > 1:3715860/1‑69 (MQ=255)
gCAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGCCa > 1:1232911/1‑69 (MQ=255)
cAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGCCagag > 1:1531050/1‑71 (MQ=255)
cAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGCCagag > 1:2258030/1‑71 (MQ=255)
cAGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACACAAACGTGGCCagag > 1:3983770/1‑71 (MQ=255)
aGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGCCAGAgg < 1:3755822/71‑1 (MQ=255)
aGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGCCAGAgg < 1:1929986/71‑1 (MQ=255)
aGAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGCCAGAgg < 1:375094/71‑1 (MQ=255)
gAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGgaga < 1:2928160/50‑1 (MQ=255)
gAAACCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGt < 1:2999966/61‑1 (MQ=255)
aaaCCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGCCAGAGGa < 1:3960682/70‑1 (MQ=255)
|
ACAGGAGGCGGAGTCGGCGTTGTACTCGTAAACCTTCAGGCCACGCTCATCCATGCAGAAATCCATACGACCAGTGATCATATGGTGACGGCGACGCTGCCAGGAGAGACGCAAACGTGGCCAGAGGA > W3110S.gb/3136165‑3136292
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
