Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F3 I0 R2
|
232 |
76.3 |
4135488 |
90.9% |
3759158 |
60.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,418,334 |
G→A |
41.8% |
V95I (GTC→ATC) |
narP → |
DNA‑binding response regulator in two‑component regulatory system with NarQ or NarX |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,418,334 | 0 | G | A | 41.8%
| 48.3
/ 97.3
| 79 | V95I (GTC→ATC) | narP | DNA‑binding response regulator in two‑component regulatory system with NarQ or NarX |
| Reads supporting (aligned to +/- strand): ref base G (16/30); new base A (20/13); total (36/43) |
| Fisher's exact test for biased strand distribution p-value = 3.86e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01 |
TTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGACCCGGAAGTATTGCTG > minE/1418271‑1418402
|
ttGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTc < 1:2851162/66‑1 (MQ=255)
ttGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTc < 1:4069200/66‑1 (MQ=255)
ttGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTc < 1:1464453/66‑1 (MQ=255)
tGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTc < 1:532225/65‑1 (MQ=255)
gcgcAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCTATGTCTTTgc < 1:2251669/69‑1 (MQ=255)
gcgcAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTgcgc > 1:3780646/1‑71 (MQ=255)
gcgcAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTgc < 1:2952815/69‑1 (MQ=255)
gcgcAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTgc < 1:3120540/69‑1 (MQ=255)
gcgcAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTgc < 1:479050/69‑1 (MQ=255)
gcgcAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTgc < 1:1816591/69‑1 (MQ=255)
gggATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATa < 1:441667/71‑1 (MQ=255)
gggATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCACTGATa < 1:2801501/71‑1 (MQ=255)
gATGGCGTTACCGCGCAAATTATTATCGTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGa > 1:1182445/1‑71 (MQ=255)
gATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGa > 1:4114358/1‑71 (MQ=255)
gATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGa > 1:4059716/1‑71 (MQ=255)
gATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGa > 1:1224311/1‑71 (MQ=255)
aTGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTg > 1:1589783/1‑60 (MQ=255)
aTGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGAc > 1:413044/1‑71 (MQ=255)
aTGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGAc > 1:2836799/1‑71 (MQ=255)
aTGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGAc > 1:2839513/1‑71 (MQ=255)
aTGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGAc > 1:794061/1‑71 (MQ=255)
aTGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGAc > 1:3843157/1‑71 (MQ=255)
aTGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGAc > 1:442333/1‑71 (MQ=255)
aTGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGAc > 1:3921525/1‑71 (MQ=255)
gCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTg < 1:744252/62‑1 (MQ=255)
gCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGc < 1:2566895/70‑1 (MQ=255)
cGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAg > 1:2033123/1‑71 (MQ=255)
ttACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCttt < 1:1122304/53‑1 (MQ=255)
ttACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGAt < 1:2854284/61‑1 (MQ=255)
aCCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGgcg < 1:1283544/70‑1 (MQ=255)
aCCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGgcg > 1:3461494/1‑70 (MQ=255)
aCCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGgcg > 1:445220/1‑70 (MQ=255)
aCCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGgcg > 1:4122240/1‑70 (MQ=255)
aCCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGgcg < 1:1531111/70‑1 (MQ=255)
aCCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGAAgg > 1:4019608/1‑68 (MQ=255)
aCCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATAACTTTGCGCTGATAGACGCAGgcg < 1:1063822/70‑1 (MQ=255)
aCCGAGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGgcg > 1:3621797/1‑70 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATATc < 1:781016/38‑1 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATATc < 1:3938932/38‑1 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATATc < 1:1900947/38‑1 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATATc < 1:1523108/38‑1 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCt < 1:381346/46‑1 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCt < 1:2216913/46‑1 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCt < 1:4095690/46‑1 (MQ=255)
attatCCTGAACGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATc < 1:106161/70‑1 (MQ=255)
ttatCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTg < 1:2941352/71‑1 (MQ=255)
atCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGgcg < 1:2131441/55‑1 (MQ=255)
cTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGAAGCAGGCGCAGACGGTTATCTGTTGa < 1:1323713/70‑1 (MQ=255)
aCCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGa < 1:3374849/71‑1 (MQ=255)
aCCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGa < 1:829329/71‑1 (MQ=255)
aCCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGa < 1:2754096/71‑1 (MQ=255)
tATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGaa < 1:2600374/64‑1 (MQ=255)
tCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGtt < 1:55274/52‑1 (MQ=255)
cGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGc > 1:1929908/1‑67 (MQ=255)
cGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGc > 1:3561514/1‑67 (MQ=255)
cGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGc > 1:1478961/1‑67 (MQ=255)
cGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGc > 1:2765934/1‑67 (MQ=255)
cGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGAcc > 1:1107099/1‑71 (MQ=255)
cGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGAcc > 1:2824864/1‑71 (MQ=255)
cGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGAcc > 1:2399797/1‑71 (MQ=255)
cGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGAcc > 1:1537142/1‑71 (MQ=255)
cGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGAcc > 1:2645725/1‑71 (MQ=255)
cGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGAcc > 1:2670738/1‑71 (MQ=255)
cGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGAcc > 1:1386831/1‑71 (MQ=255)
cGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGAcc > 1:2764047/1‑71 (MQ=255)
cGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGAcc > 1:1277533/1‑71 (MQ=255)
cGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGAcc > 1:1254502/1‑71 (MQ=255)
gATGCCTCCAGCGATGTCTTTGCGCTGATAGGCGCAGGCGCAGACGGTTATCTGTTGaaa < 1:3686685/60‑1 (MQ=255)
gATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGaaa < 1:3748865/60‑1 (MQ=255)
tGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGa > 1:3755850/1‑60 (MQ=255)
tGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGa > 1:3475957/1‑60 (MQ=255)
cTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGACCCGGAAg < 1:3418895/71‑1 (MQ=255)
tCCAGCGATGTCTTTGCGCTTATAGACGCAGGCGCAGACGGTTATCTGTTGAAAg < 1:155829/55‑1 (MQ=255)
tCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAg < 1:954941/55‑1 (MQ=255)
tCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAg < 1:1776858/55‑1 (MQ=255)
tCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAg < 1:2830863/55‑1 (MQ=255)
tCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACa < 1:3716664/58‑1 (MQ=255)
cAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGACCCGGAAGTAt > 1:3515924/1‑71 (MQ=255)
aTGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGACCCGGAAGTATTGCTg < 1:2160144/71‑1 (MQ=255)
|
TTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGACCCGGAAGTATTGCTG > minE/1418271‑1418402
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
