Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F8 I0 R2
|
296 |
77.6 |
4260404 |
88.1% |
3753415 |
61.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,418,334 |
G→A |
66.2% |
V95I (GTC→ATC) |
narP → |
DNA‑binding response regulator in two‑component regulatory system with NarQ or NarX |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,418,334 | 0 | G | A | 66.2%
| 73.9
/ 67.3
| 68 | V95I (GTC→ATC) | narP | DNA‑binding response regulator in two‑component regulatory system with NarQ or NarX |
| Reads supporting (aligned to +/- strand): ref base G (10/13); new base A (28/17); total (38/30) |
| Fisher's exact test for biased strand distribution p-value = 1.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 |
GCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGACCCGGAAGTAT > minE/1418268‑1418397
|
gCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCtt > 1:2464433/1‑71 (MQ=255)
gCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCtt > 1:2034379/1‑71 (MQ=255)
ccTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCttt > 1:4051155/1‑71 (MQ=255)
ccTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCttt > 1:2613106/1‑71 (MQ=255)
cgcAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCt < 1:3514373/71‑1 (MQ=255)
cAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGa < 1:1521351/71‑1 (MQ=255)
cAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGa < 1:1837685/71‑1 (MQ=255)
cAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGa < 1:3429298/71‑1 (MQ=255)
cAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGa < 1:2906648/71‑1 (MQ=255)
aTGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGa > 1:815351/1‑70 (MQ=255)
aTGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGAc > 1:681350/1‑71 (MQ=255)
tGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCTATGCCTCCAGCGATGTCTTTgc < 1:1291870/60‑1 (MQ=255)
tGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTgc < 1:612367/60‑1 (MQ=255)
tGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTgc < 1:1373835/60‑1 (MQ=255)
tGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATa < 1:39716/67‑1 (MQ=255)
tGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATa < 1:1361339/67‑1 (MQ=255)
aCCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGgcg > 1:967295/1‑70 (MQ=255)
aaaTTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGt < 1:2101787/71‑1 (MQ=255)
aaTTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCt < 1:1243079/48‑1 (MQ=255)
aaTTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCt < 1:4054441/48‑1 (MQ=255)
aaTTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCt < 1:3811547/48‑1 (MQ=255)
aaTTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCt < 1:2861269/48‑1 (MQ=255)
aaTTATTATCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGtt < 1:4178642/71‑1 (MQ=255)
attattATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTa > 1:1818617/1‑71 (MQ=255)
attattATCCTGACCGTATCCGATGCCTACAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTa > 1:1682649/1‑71 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTAt < 1:1799774/71‑1 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTAt < 1:3612320/71‑1 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTa > 1:2438688/1‑70 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTa > 1:2667875/1‑70 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTAt > 1:3614735/1‑71 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTAt > 1:3764975/1‑71 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTAt > 1:3637691/1‑71 (MQ=255)
ttattaTCCTGACCGTATCCGATGCCTACAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTAt > 1:3620620/1‑71 (MQ=255)
tattatCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTAt < 1:2777949/70‑1 (MQ=255)
tattatCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGa > 1:711203/1‑47 (MQ=255)
tattatCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGa > 1:3863178/1‑47 (MQ=255)
tattatCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGa > 1:418569/1‑47 (MQ=255)
tattatCCTGACCGTATCCGATGACTCCAGCGATATCTTTGCGCTGa > 1:4007153/1‑47 (MQ=39)
ttatCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGa > 1:1914448/1‑45 (MQ=255)
ttatCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGa > 1:372287/1‑45 (MQ=255)
tCCTGACCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGa < 1:1842521/42‑1 (MQ=255)
ccTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTg > 1:279848/1‑70 (MQ=255)
aCCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGa > 1:2527629/1‑37 (MQ=255)
aCCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGa > 1:2022970/1‑37 (MQ=255)
aCCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGa > 1:4070007/1‑37 (MQ=255)
aCCGTATCCGATGCCTCCAGCGATATCTTTTCGCTGATAGACGCAGGCGCAGACg > 1:3960116/1‑55 (MQ=39)
aCCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGaaa < 1:2384924/69‑1 (MQ=255)
aCCGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGa > 1:2327021/1‑71 (MQ=255)
cGTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACa < 1:3015172/71‑1 (MQ=255)
gTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGtt < 1:2934232/55‑1 (MQ=255)
gTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGtt < 1:4219478/55‑1 (MQ=255)
gTATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGtt < 1:3326493/55‑1 (MQ=255)
tATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGc < 1:1637693/71‑1 (MQ=255)
tATCCGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGtt < 1:2111969/54‑1 (MQ=255)
tCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGa > 1:1873940/1‑71 (MQ=255)
ccGATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGa < 1:828771/60‑1 (MQ=255)
cGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGAcc > 1:2427108/1‑71 (MQ=255)
gATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGaaa > 1:2758204/1‑60 (MQ=255)
gATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGaaa > 1:702211/1‑60 (MQ=255)
gATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGaaa > 1:3026909/1‑60 (MQ=255)
gATGCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGaaa > 1:2900662/1‑60 (MQ=255)
gCCTCCAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGAccc > 1:3816148/1‑68 (MQ=255)
cTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGACCCGGAAg < 1:32207/71‑1 (MQ=255)
ccAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGtt > 1:210840/1‑49 (MQ=255)
cAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTg > 1:498073/1‑46 (MQ=255)
cAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTg > 1:1964232/1‑46 (MQ=255)
cAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGACCCGGAAGTAt > 1:3079359/1‑71 (MQ=255)
cAGCGATATCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGACCCGGAAGTAt < 1:4072277/71‑1 (MQ=255)
|
GCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTATCTGTTGAAAGACAGCGACCCGGAAGTAT > minE/1418268‑1418397
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
