mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 60,568 | G→A | 43.1% | R125R (CGC→CGT) | hepA ← | RNA polymerase‑associated helicase protein |
| RA | 138,172 | A→G | 52.8% | N665N (AAT→AAC) | htrE ← | predicted outer membrane usher protein |
| RA | 158,183 | A→G | 75.8% | N41S (AAC→AGC) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
| RA | 163,666 | C→T | 42.4% | E77K (GAA→AAA) | yaeI ← | predicted phosphatase |
| RA | 199,135 | T→A | 35.4% | S207C (AGC→TGC) | metQ ← | DL‑methionine transporter subunit |
| RA | 204,511 | C→T | 100% | intergenic (+111/‑73) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 204,556 | A→G | 100% | intergenic (+156/‑28) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 216,053 | T→C | 28.1% | intergenic (+222/‑106) | aspV → / → yafT | tRNA‑Asp/predicted aminopeptidase |
| RA | 247,251 | A→G | 8.3% | K298K (AAA→AAG) | phoR → | sensory histidine kinase in two‑component regulatory system with PhoB |
| RA | 249,414 | A→C | 12.6% | intergenic (+35/‑41) | brnQ → / → proY | predicted branched chain amino acid transporter/predicted cryptic proline transporter |
| RA | 286,800 | T→C | 46.7% | P302P (CCT→CCC) | clpX → | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
| RA | 297,667 | C→T | 32.2% | R110C (CGT→TGT) | mdlA → | fused predicted multidrug transporter subunits and ATP‑binding components of ABC superfamily |
| RA | 298,537 | C→T | 45.5% | L400L (CTG→TTG) | mdlA → | fused predicted multidrug transporter subunits and ATP‑binding components of ABC superfamily |
| RA | 300,220 | G→A | 51.6% | L372L (CTG→CTA) | mdlB → | fused predicted multidrug transporter subunits and ATP binding components of ABC superfamily |
| RA | 335,162 | G→A | 78.3% | G130G (GGC→GGT) | ybaK ← | conserved hypothetical protein |
| RA | 374,214 | G→A | 57.4% | G355D (GGT→GAT) | fepE → | regulator of length of O‑antigen component of lipopolysaccharide chains |
| RA | 402,650 | C→T | 45.0% | G38D (GGC→GAC) | rlpA ← | minor lipoprotein |
| RA | 430,231 | G→A | 45.8% | D280N (GAC→AAC) | glnS → | glutamyl‑tRNA synthetase |
| RA | 447,412 | G→A | 100% | R102C (CGC→TGC) | kdpD ← | fused sensory histidine kinase in two‑component regulatory system with KdpE |
| RA | 498,441 | C→T | 63.6% | G24S (GGT→AGT) | galE ← | UDP‑galactose‑4‑epimerase |
| RA | 507,425 | C→A | 32.2% | A71D (GCT→GAT) | ybhH → | conserved hypothetical protein |
| RA | 555,000 | G→A | 10.7% | D148N (GAC→AAC) | fsaA → | fructose‑6‑phosphate aldolase 1 |
| RA | 558,918 | T→C | 26.4% | P55P (CCT→CCC) | cmr → | multidrug efflux system protein |
| RA | 581,876 | G→A | 24.7% | P638P (CCG→CCA) | clpA → | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
| RA | 597,552 | C→T | 54.2% | intergenic (+133/‑106) | serS → / → dmsA | seryl‑tRNA synthetase, also charges selenocysteinyl‑tRNA with serine/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 598,845 | C→T | 19.3% | I396I (ATC→ATT) | dmsA → | dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 623,375 | C→T | 67.6% | T19I (ACC→ATC) | msbA → | fused lipid transporter subunits and membrane component and ATP‑binding component of ABC superfamily |
| RA | 656,044 | T→C | 18.4% | F44L (TTC→CTC) | ycbS → | predicted outer membrane usher protein |
| RA | 694,025 | T→A | 7.7% | L193* (TTA→TAA) | hyaF → | protein involved in nickel incorporation into hydrogenase‑1 proteins |
| RA | 696,779 | C→T | 52.1% | P262L (CCC→CTC) | appB → | cytochrome bd‑II oxidase, subunit II |
| RA | 813,910 | A→G | 44.6% | C60C (TGT→TGC) | prsA ← | phosphoribosylpyrophosphate synthase |
| RA | 868,233 | C→G | 5.9% | intergenic (‑167/‑53) | yciK ← / → sohB | predicted oxoacyl‑(acyl carrier protein) reductase, EmrKY‑TolC system/predicted inner membrane peptidase |
| RA | 879,563 | T→C | 47.2% | Y18H (TAT→CAT) | yciM → | conserved hypothetical protein |
| RA | 880,753 | G→A | 66.0% | intergenic (+72/‑122) | yciM → / → pyrF | conserved hypothetical protein/orotidine‑5'‑phosphate decarboxylase |
| RA | 899,197 | C→T | 55.3% | P78L (CCT→CTT) | pspC → | transcriptional activator |
| RA | 899,672 | T→C | 21.9% | L15P (CTG→CCG) | pspE → | thiosulfate:cyanide sulfurtransferase |
| RA | 904,512 | G→T | 37.2% | L161L (CTG→CTT) | ycjP → | predicted sugar transporter subunit |
| RA | 904,516 | A→T | 28.8% | S163C (AGC→TGC) | ycjP → | predicted sugar transporter subunit |
| RA | 909,573 | C→T | 46.5% | L584L (CTG→TTG) | ycjT → | predicted hydrolase |
| RA | 1,010,827 | C→T | 6.0% | Y85Y (TAC→TAT) | rstB → | sensory histidine kinase in two‑component regulatory system with RstA |
| RA | 1,010,832 | T→A | 7.1% | L87H (CTT→CAT) | rstB → | sensory histidine kinase in two‑component regulatory system with RstA |
| RA | 1,011,234 | A→G | 41.1% | H221R (CAC→CGC) | rstB → | sensory histidine kinase in two‑component regulatory system with RstA |
| RA | 1,026,348 | T→C | 50.9% | E175G (GAG→GGG) | malI ← | DNA‑binding transcriptional repressor |
| RA | 1,027,446 | A→G | 46.2% | N134S (AAC→AGC) | malX → | fused maltose and glucose‑specific PTS enzyme IIBC components |
| RA | 1,036,505 | G→A | 100% | A632A (GCG→GCA) | rsxC → | fused predicted 4Fe‑4S ferredoxin‑type protein |
| RA | 1,063,788 | T→A | 11.6% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/predicted transporter |
| RA | 1,063,791 | T→A | 12.5% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/predicted transporter |
| RA | 1,069,991 | G→A | 41.3% | Q296Q (CAG→CAA) | cfa → | cyclopropane fatty acyl phospholipid synthase |
| RA | 1,073,671 | C→T | 52.2% | G50S (GGC→AGC) | ydhQ ← | conserved hypothetical protein |
| RA | 1,094,567 | T→C | 58.7% | I604V (ATT→GTT) | ydiJ ← | predicted FAD‑linked oxidoreductase |
| RA | 1,104,294 | A→T | 10.2% | G339G (GGA→GGT) | ydiF → | fused predicted acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit and beta subunit |
| RA | 1,111,527 | G→A | 50.9% | C287Y (TGT→TAT) | ydiD → | short chain acyl‑CoA synthetase, anaerobic |
| RA | 1,132,803 | G→A | 40.0% | intergenic (+119/‑38) | arpB → / → yniD | ECK1718:JW5278+JW1710:b4494; hypothetical protein/hypothetical protein |
| RA | 1,142,011 | T→C | 43.0% | F152L (TTC→CTC) | katE → | hydroperoxidase HPII(III) |
| RA | 1,142,959 | A→G | 57.1% | N468D (AAC→GAC) | katE → | hydroperoxidase HPII(III) |
| RA | 1,179,007 | A→T | 13.2% | N153Y (AAC→TAC) | ansA → | cytoplasmic L‑asparaginase I |
| RA | 1,215,064 | G→A | 60.4% | L291L (CTG→CTA) | yebQ → | predicted transporter |
| RA | 1,224,676 | T→C | 46.0% | F180L (TTT→CTT) | yebU → | predicted methyltransferase |
| RA | 1,240,151 | A→G | 60.0% | L27P (CTG→CCG) | zwf ← | glucose‑6‑phosphate dehydrogenase |
| RA | 1,249,224 | C→T | 45.2% | D17N (GAT→AAT) | ruvB ← | ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| RA | 1,257,376 | T→C | 54.1% | F7L (TTT→CTT) | yecP → | predicted methyltransferase |
| RA | 1,291,126 | G→A | 66.3% | intergenic (+241/+212) | yeeN → / ← asnW | conserved hypothetical protein/tRNA‑Asn |
| RA | 1,303,538 | T→C | 60.9% | F84L (TTT→CTT) | sbcB → | exonuclease I |
| RA | 1,328,372 | G→A | 51.5% | F131F (TTC→TTT) | wzxC ← | colanic acid exporter |
| RA | 1,408,722 | G→A | 35.0% | A331T (GCG→ACG) | yejF → | fused predicted oligopeptide transporter subunits and ATP‑binding components of ABC superfamily |
| RA | 1,418,334 | G→A | 66.2% | V95I (GTC→ATC) | narP → | DNA‑binding response regulator in two‑component regulatory system with NarQ or NarX |
| RA | 1,475,665 | A→T | 48.6% | T244S (ACC→TCC) | nrdB → | ribonucleoside diphosphate reductase 1, beta subunit, ferritin‑like |
| RA | 1,485,005 | C→T | 19.1% | D279N (GAT→AAT) | menF ← | isochorismate synthase 2 |
| RA | 1,496,561 | C→T | 41.8% | M327I (ATG→ATA) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
| RA | 1,511,807 | G→A | 53.7% | E359K (GAG→AAG) | pta → | phosphate acetyltransferase |
| RA | 1,523,433 | G→T | 37.5% | A78S (GCC→TCC) | flk → | predicted flagella assembly protein |
| RA | 1,533,542 | G→A | 41.5% | P51S (CCT→TCT) | prmB ← | N5‑glutamine methyltransferase |
| RA | 1,569,653 | G→C | 11.6% | intergenic (‑328/‑8) | mntH ← / → nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter |
| RA | 1,569,654 | A→T | 11.8% | intergenic (‑329/‑7) | mntH ← / → nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter |
| RA | 1,569,655 | G→C | 11.8% | intergenic (‑330/‑6) | mntH ← / → nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter |
| RA | 1,598,488 | C→T | 50.8% | A60A (GCG→GCA) | yfeT ← | predicted DNA‑binding transcriptional regulator |
| RA | 1,697,632 | A→G | 44.7% | Y195C (TAT→TGT) | yfhR → | predicted peptidase |
| RA | 1,718,872 | G→C | 9.8% | D118H (GAC→CAC) | hmp → | fused nitric oxide dioxygenase and dihydropteridine reductase 2 |
| RA | 1,747,876 | G→A | 26.2% | S44L (TCA→TTA) | yfiE ← | predicted DNA‑binding transcriptional regulator |
| RA | 1,763,556 | T→C | 54.6% | noncoding (288/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,763,636 | A→G | 27.3% | noncoding (208/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,789,346 | Δ1 bp | 43.7% | coding (483/1269 nt) | ygaF → | hypothetical protein |
| RA | 1,798,695 | A→G | 46.7% | Q239R (CAA→CGA) | proV → | glycine betaine transporter subunit |
| RA | 1,803,598 | T→C | 27.0% | N30N (AAT→AAC) | ygaH → | predicted inner membrane protein |
| RA | 1,807,377 | T→C | 26.1% | intergenic (+58/+6) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteinase |
| RA | 1,822,088 | C→T | 7.4% | S465S (TCC→TCT) | norV → | flavorubredoxin oxidoreductase |
| RA | 1,827,932 | C→T | 57.1% | A392V (GCG→GTG) | mutS → | methyl‑directed mismatch repair protein |
| RA | 1,834,094 | A→G | 33.3% | D65G (GAT→GGT) | ygbM → | conserved hypothetical protein |
| RA | 1,845,199 | G→T | 58.8% | P266T (CCG→ACG) | cysD ← | sulfate adenylyltransferase, subunit 2 |
| RA | 1,874,329 | A→G | 37.5% | I191T (ATT→ACT) | ygcF ← | conserved hypothetical protein |
| RA | 1,883,198 | A→G | 50.4% | F429L (TTC→CTC) | rumA ← | 23S rRNA (uracil‑5)‑methyltransferase |
| RA | 1,890,961 | G→A | 69.4% | P208S (CCG→TCG) | gudP ← | predicted D‑glucarate transporter |
| RA | 1,892,019:1 | +GC | 100% | intergenic (‑437/+54) | gudP ← / ← ygdL | predicted D‑glucarate transporter/conserved hypothetical protein |
| RA | 1,914,848 | T→C | 56.8% | E208E (GAA→GAG) | ptsP ← | fused PEP‑protein phosphotransferase (enzyme I) of PTS system |
| RA | 1,983,953 | G→C | 12.7% | A93A (GCG→GCC) | yggV → | dITP/XTP pyrophosphatase |
| RA | 1,993,572 | G→A | 42.6% | V289M (GTG→ATG) | nupG → | nucleoside transporter |
| RA | 2,004,302 | G→A | 51.3% | S483F (TCT→TTT) | hybC ← | hydrogenase 2, large subunit |
| RA | 2,065,298 | T→C | 7.8% | D513D (GAT→GAC) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| RA | 2,065,301 | T→C | 7.8% | D514D (GAT→GAC) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| RA | 2,065,304 | A→C | 7.6% | E515D (GAA→GAC) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| RA | 2,065,319 | G→C | 8.2% | G520G (GGG→GGC) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| RA | 2,092,381 | C→T | 36.2% | A257T (GCC→ACC) | yhaO ← | predicted transporter |
| RA | 2,101,664 | A→C | 7.4% | T432T (ACA→ACC) | garD → | (D)‑galactarate dehydrogenase |
| RA | 2,124,793 | C→T | 6.4% | Q70Q (CAG→CAA) | yhbP ← | conserved hypothetical protein |
| RA | 2,144,345 | G→A | 45.0% | D206N (GAT→AAT) | argG → | argininosuccinate synthetase |
| RA | 2,168,106 | T→A | 5.0% | Y60N (TAT→AAT) | yrbK → | conserved hypothetical protein |
| RA | 2,168,110 | G→A | 5.3% | R61Q (CGA→CAA) | yrbK → | conserved hypothetical protein |
| RA | 2,168,113 | T→C | 5.2% | L62S (TTG→TCG) | yrbK → | conserved hypothetical protein |
| RA | 2,168,117 | T→A | 5.2% | I63I (ATT→ATA) | yrbK → | conserved hypothetical protein |
| RA | 2,211,683 | A→G | 37.9% | I465I (ATT→ATC) | rng ← | ribonuclease G |
| RA | 2,236,903 | G→A | 45.9% | A150T (GCT→ACT) | purD → | phosphoribosylglycinamide synthetase phosphoribosylamine‑glycine ligase |
| RA | 2,262,618 | C→T | 44.3% | intergenic (‑227/+186) | rplJ ← / ← rplA | 50S ribosomal subunit protein L10/50S ribosomal subunit protein L1 |
| RA | 2,283,783 | G→T | 41.5% | L39M (CTG→ATG) | oxyR ← | DNA‑binding transcriptional dual regulator |
| RA | 2,321,698 | G→A | 52.7% | T93I (ACC→ATC) | cdh ← | CDP‑diacylglycerol phosphotidylhydrolase |
| RA | 2,348,624 | T→G | 9.8% | intergenic (+144/+237) | yihA → / ← polA | GTP‑binding protein/fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease |
| RA | 2,348,627 | C→A | 21.9% | intergenic (+147/+234) | yihA → / ← polA | GTP‑binding protein/fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease |
| RA | 2,359,867 | G→A | 21.7% | noncoding (1228/2905 nt) | rrlA ← | 23S ribosomal RNA |
| RA | 2,359,876 | C→T | 20.0% | noncoding (1219/2905 nt) | rrlA ← | 23S ribosomal RNA |
| RA | 2,377,802 | A→T | 31.7% | Y196N (TAC→AAC) | ubiB ← | 2‑octaprenylphenol hydroxylase |
| RA | 2,441,897 | C→T | 78.2% | L462L (TTG→TTA) | ilvA ← | threonine deaminase |
| RA | 2,467,238 | G→T | 31.8% | L234L (CTG→CTT) | atpA → | F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 2,489,241 | T→C | 10.7% | R80R (CGT→CGC) | dnaN → | DNA polymerase III, beta subunit |
| RA | 2,513,416 | T→C | 50.0% | F203S (TTT→TCT) | gltS → | glutamate transporter |
| RA | 2,523,040 | T→C | 39.7% | K225K (AAA→AAG) | dinD ← | DNA‑damage‑inducible protein |
| RA | 2,523,551 | T→A | 5.6% | H55L (CAC→CTC) | dinD ← | DNA‑damage‑inducible protein |
| RA | 2,523,557 | C→G | 5.1% | S53T (AGT→ACT) | dinD ← | DNA‑damage‑inducible protein |
| RA | 2,523,766 | T→A | 8.0% | intergenic (‑52/+169) | dinD ← / ← yicC | DNA‑damage‑inducible protein/conserved hypothetical protein |
| RA | 2,523,769 | T→A | 9.4% | intergenic (‑55/+166) | dinD ← / ← yicC | DNA‑damage‑inducible protein/conserved hypothetical protein |
| RA | 2,528,498 | C→T | 24.6% | D83N (GAT→AAT) | dfp ← | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase, FMN‑binding |
| RA | 2,530,398 | G→A | 31.7% | A26T (GCA→ACA) | mutM → | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
| RA | 2,531,609 | A→G | 64.2% | I14I (ATT→ATC) | coaD ← | pantetheine‑phosphate adenylyltransferase |
| RA | 2,540,373 | G→T | 35.8% | D300Y (GAT→TAT) | rfaJ → | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase |
| RA | 2,599,135 | A→T | 29.5% | I33I (ATT→ATA) | gor ← | glutathione oxidoreductase |
| RA | 2,651,936 | C→T | 37.4% | A57V (GCG→GTG) | glgC → | glucose‑1‑phosphate adenylyltransferase |
| RA | 2,677,626 | C→T | 40.6% | A102T (GCA→ACA) | yhgA ← | predicted transposase |
| RA | 2,687,159 | G→A | 44.0% | L374L (CTG→TTG) | pck ← | phosphoenolpyruvate carboxykinase |
| RA | 2,702,622 | G→T | 5.1% | V5F (GTC→TTC) | aroB → | 3‑dehydroquinate synthase |
| RA | 2,732,305:1 | +G | 40.4% | coding (375/723 nt) | yheO → | predicted DNA‑binding transcriptional regulator |
| RA | 2,732,642 | C→A | 49.0% | Q238K (CAA→AAA) | yheO → | predicted DNA‑binding transcriptional regulator |
| RA | 2,850,177 | G→A | 54.2% | Q286* (CAG→TAG) | yjeP ← | predicted mechanosensitive channel |
| RA | 2,858,845 | G→A | 48.0% | S373S (TCG→TCA) | amiB → | N‑acetylmuramoyl‑l‑alanine amidase II |
| RA | 2,864,584 | C→T | 43.2% | A295A (GCC→GCT) | hflK → | modulator for HflB protease specific for phage lambda cII repressor |
| RA | 2,912,429 | C→T | 47.8% | A135T (GCG→ACG) | pyrI ← | aspartate carbamoyltransferase, regulatory subunit |
| RA | 2,947,335 | A→G | 53.7% | L158P (CTG→CCG) | dnaT ← | DNA biosynthesis protein |
| RA | 2,948,123 | T→C | 33.8% | T40A (ACC→GCC) | yjjB ← | conserved inner membrane protein |
| RA | 2,971,396 | T→C | 28.4% | V71A (GTG→GCG) | serB → | 3‑phosphoserine phosphatase |
| RA | 2,986,542 | A→G | 33.1% | L19L (TTG→CTG) | arcA ← | DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA |
| RA | 2,987,375 | A→G | 55.8% | A48A (GCA→GCG) | yjtD → | predicted rRNA methyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | minE | 899417 | 899451 | 35 | 11 [10] | [6] 12 | pspD | peripheral inner membrane phage‑shock protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 5862 = | 60 (0.950) | 33 (0.580) +TAGTG |
4/90 | NT | 36.4% | coding (598/777 nt) | yaaA | conserved hypothetical protein |
| ? | minE | 904500 = | 68 (1.070) | coding (471/843 nt) | ycjP | predicted sugar transporter subunit | |||||
| * | ? | minE | = 139618 | 68 (1.070) | 58 (1.210) +GTTTTGGTTTCG |
5/76 | NT | 54.2% | coding (549/2598 nt) | htrE | predicted outer membrane usher protein |
| ? | minE | = 389119 | 61 (0.960) | coding (637/1161 nt) | ybdL | methionine aminotransferase, PLP‑dependent | |||||
| * | ? | minE | = 208483 | 98 (1.550) | 7 (0.120) | 3/94 | NT | 6.9% | coding (493/804 nt) | dkgB | 2,5‑diketo‑D‑gluconate reductase B |
| ? | minE | = 208508 | 98 (1.650) | coding (518/804 nt) | dkgB | 2,5‑diketo‑D‑gluconate reductase B | |||||
| * | ? | minE | 344370 = | 80 (1.260) | 49 (1.020) +CCTTTTTCGGTG |
5/76 | NT | 40.8% | intergenic (‑128/‑18) | ybbK/ybbL | predicted protease, membrane anchored/predicted transporter subunit |
| ? | minE | 2323857 = | 107 (1.690) | coding (497/963 nt) | pfkA | 6‑phosphofructokinase I | |||||
| * | ? | minE | 978654 = | 51 (0.810) | 12 (0.230) +TGACACAC |
3/84 | NT | 19.6% | coding (491/2046 nt) | dcp | dipeptidyl carboxypeptidase II |
| ? | minE | = 1179011 | 66 (1.040) | coding (461/984 nt) | ansA | cytoplasmic L‑asparaginase I | |||||
| * | ? | minE | = 1271403 | 49 (0.770) | 10 (0.180) | 3/88 | NT | 19.2% | coding (854/1695 nt) | yedQ | predicted diguanylate cyclase |
| ? | minE | = 1271414 | 41 (0.740) | coding (843/1695 nt) | yedQ | predicted diguanylate cyclase | |||||
| * | ? | minE | 1515502 = | 57 (0.900) | 5 (0.090) | 3/90 | NT | 8.9% | intergenic (‑12/+25) | purF/cvpA | amidophosphoribosyltransferase/membrane protein required for colicin V production |
| ? | minE | 1515555 = | 51 (0.890) | coding (461/489 nt) | cvpA | membrane protein required for colicin V production | |||||
| * | ? | minE | = 1557960 | 80 (1.260) | 6 (0.100) | 3/92 | NT | 8.2% | coding (1000/1164 nt) | emrK | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component |
| ? | minE | = 1557988 | 61 (1.050) | coding (972/1164 nt) | emrK | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component | |||||
| * | ? | minE | = 1574751 | 49 (0.770) | 7 (0.130) | 3/86 | NT | 13.1% | coding (785/885 nt) | xapR | DNA‑binding transcriptional activator |
| ? | minE | = 1574788 | 51 (0.940) | coding (748/885 nt) | xapR | DNA‑binding transcriptional activator | |||||
| * | ? | minE | 1597441 = | 41 (0.650) | 83 (1.720) +CAACTAAACGAG |
8/76 | NT | 65.5% | coding (241/792 nt) | ucpA | predicted oxidoredutase, sulfate metabolism protein |
| ? | minE | 2092379 = | 74 (1.170) | coding (771/1269 nt) | yhaO | predicted transporter | |||||
| * | ? | minE | = 1611756 | 1 (0.020) | 39 (0.630) +A |
11/98 | NT | 62.4% | coding (1397/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase |
| ? | minE | 2083040 = | 47 (0.740) | coding (66/663 nt) | yqjA | conserved inner membrane protein | |||||
| * | ? | minE | 1706121 = | 82 (1.290) | 9 (0.160) | 4/88 | NT | 12.2% | coding (162/495 nt) | yphA | predicted inner membrane protein |
| ? | minE | 1706138 = | 57 (1.020) | coding (179/495 nt) | yphA | predicted inner membrane protein | |||||
| * | ? | minE | = 1993269 | 66 (1.040) | 8 (0.150) | 3/84 | NT | 10.8% | coding (562/1257 nt) | nupG | nucleoside transporter |
| ? | minE | = 1993315 | 77 (1.450) | coding (608/1257 nt) | nupG | nucleoside transporter | |||||
| * | ? | minE | = 2120881 | 99 (1.560) | 7 (0.120) | 3/94 | NT | 7.1% | intergenic (+5/‑15) | yraN/yraO | conserved hypothetical protein/DnaA initiator‑associating factor for replication initiation |
| ? | minE | = 2120914 | 91 (1.530) | coding (19/591 nt) | yraO | DnaA initiator‑associating factor for replication initiation | |||||
| * | ? | minE | = 2680197 | 90 (1.420) | 6 (0.100) | 3/92 | NT | 6.7% | coding (493/2322 nt) | feoB | fused ferrous iron transporter, protein B |
| ? | minE | = 2680215 | 83 (1.420) | coding (475/2322 nt) | feoB | fused ferrous iron transporter, protein B | |||||
| * | ? | minE | 2738325 = | 86 (1.360) | 6 (0.140) | 3/70 | NT | 11.1% | intergenic (+99/‑430) | tufA/rpsJ | protein chain elongation factor EF‑Tu/30S ribosomal subunit protein S10 |
| ? | minE | 2738371 = | 36 (0.810) | intergenic (+145/‑384) | tufA/rpsJ | protein chain elongation factor EF‑Tu/30S ribosomal subunit protein S10 | |||||