Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,000,186 |
G→A |
G179D (GGT→GAT) |
ydgD → |
predicted peptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,000,186 | 0 | G | A | 100.0%
| 186.3
/ NA
| 57 | G179D (GGT→GAT) | ydgD | predicted peptidase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (31/26); total (31/26) |
ACGCCGTTGCCGTTATTTGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGGTCGTAAAGTGACTCAGGCAGGCTACCCTGAAGATCATCTCGATACGTTGTACAGTCATCAA > minE/1000125‑1000247
|
aCGCCGTTGCCGTTATTTGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGt > 1:388673/1‑71 (MQ=255)
aCGCCGTTGCCGTTATTTGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGt > 1:1537500/1‑71 (MQ=255)
aCGCCGTTGCCGTTATTTGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGt > 1:3450826/1‑71 (MQ=255)
aCGCCGTTGCCGTTATTTGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGt > 1:2531906/1‑71 (MQ=255)
aTTTGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:1918303/1‑70 (MQ=255)
aTTTGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:2580548/1‑70 (MQ=255)
aTTTGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:2132398/1‑70 (MQ=255)
aTTTGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:71145/1‑70 (MQ=255)
tGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACt > 1:1031657/1‑58 (MQ=255)
tGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACt > 1:4003007/1‑58 (MQ=255)
tGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACt > 1:3671314/1‑58 (MQ=255)
tGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACt > 1:2883568/1‑58 (MQ=255)
tGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACt > 1:2881248/1‑58 (MQ=255)
tGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACt > 1:2801653/1‑58 (MQ=255)
tGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACt > 1:2799585/1‑58 (MQ=255)
tGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACt > 1:2682028/1‑58 (MQ=255)
tGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACt > 1:210338/1‑58 (MQ=255)
tGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACt > 1:1513627/1‑58 (MQ=255)
tGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACt > 1:1670531/1‑58 (MQ=255)
tGAGGGAGATAAAGCCGCGCTTAACGCCGCATTAAAAGCGGCAGATCGTAAAGTGACt > 1:1982174/1‑58 (MQ=39)
ggAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGa < 1:2181638/52‑1 (MQ=255)
ggAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGa < 1:3983216/52‑1 (MQ=255)
ggAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGa < 1:4148774/52‑1 (MQ=255)
ggAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGa < 1:3854385/52‑1 (MQ=255)
ggAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGa < 1:4255034/52‑1 (MQ=255)
ggAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGa < 1:4307128/52‑1 (MQ=255)
ggAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGa < 1:3478250/52‑1 (MQ=255)
ggAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGa < 1:3332448/52‑1 (MQ=255)
ggAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGa < 1:1906701/52‑1 (MQ=255)
ggAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGa < 1:859247/52‑1 (MQ=255)
ggAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGa < 1:627512/52‑1 (MQ=255)
gagaTAAAGCCGCGCTTAGCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGaa < 1:4134085/71‑1 (MQ=255)
gagaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGaa < 1:3414378/71‑1 (MQ=255)
gagaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGaa < 1:1565832/71‑1 (MQ=255)
gagaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGaa < 1:2777437/71‑1 (MQ=255)
gagaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGaa < 1:260152/71‑1 (MQ=255)
gagaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGaa < 1:3809238/71‑1 (MQ=255)
gagaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGaa < 1:769555/71‑1 (MQ=255)
gagaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGaa < 1:1411050/71‑1 (MQ=255)
gaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:4377926/1‑60 (MQ=255)
gaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:995662/1‑60 (MQ=255)
gaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:743174/1‑60 (MQ=255)
gaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:1071545/1‑60 (MQ=255)
gaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:3937921/1‑60 (MQ=255)
gaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:3885694/1‑60 (MQ=255)
gaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:3627978/1‑60 (MQ=255)
gaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:2206814/1‑60 (MQ=255)
gaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCaggcaggc > 1:2117233/1‑60 (MQ=255)
gaTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAATGACTCaggcaggc > 1:2284429/1‑60 (MQ=255)
aTAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTg > 1:693554/1‑66 (MQ=255)
tAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGAAGat < 1:3005123/70‑1 (MQ=255)
cATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGAAGATCATCTCGATACGTTGTACAGt < 1:3485159/71‑1 (MQ=255)
cATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGAAGATCATCTCGATACGTTGTACAGt < 1:2102999/71‑1 (MQ=255)
cATTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGAAGATCATCTCGATACGTTGTACAGt < 1:1989816/71‑1 (MQ=255)
aTTAAAAGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGAAGATCATCTCGATACGTTGTACAGt < 1:2267585/70‑1 (MQ=255)
aaGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGAAGATCATCTCGATACGTTGTACAGt < 1:4109204/65‑1 (MQ=255)
aaGCGGCAGATCGTAAAGTGACTCAGGCAGGCTACCCTGAAGATCATCTCGATACGTTGTACAGTCATCaa < 1:636156/71‑1 (MQ=255)
|
ACGCCGTTGCCGTTATTTGAGGGAGATAAAGCCGCGCTTACCGCCGCATTAAAAGCGGCAGGTCGTAAAGTGACTCAGGCAGGCTACCCTGAAGATCATCTCGATACGTTGTACAGTCATCAA > minE/1000125‑1000247
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
