Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,496,286 |
A→G |
L167P (CTT→CCT) |
ydcI ← |
predicted DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,496,286 | 0 | A | G | 100.0%
| 101.7
/ NA
| 28 | L167P (CTT→CCT) | ydcI | predicted DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (25/3); total (25/3) |
GGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCC > W3110S.gb/1496230‑1496316
|
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:227293/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:947362/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:808676/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:738176/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:698749/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:495633/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:437715/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:40639/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:405613/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:2390478/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:2361863/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:1045725/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:2226087/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:2136293/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:2036265/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:1887275/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:1790964/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:1544463/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:1309320/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGtc > 1:1056163/1‑65 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGt > 1:185163/1‑64 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGt > 1:717516/1‑64 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGt > 1:1047687/1‑64 (MQ=255)
ggTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGCtc > 1:1966722/1‑65 (MQ=255)
ggTGATTAGGGAGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGt > 1:2430017/1‑64 (MQ=255)
cTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGTCATCAGTTCAGGATCTGACATcc < 1:1827997/65‑1 (MQ=255)
cTTCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGTCATCAGTTCAGGATCTGACATcc < 1:1408490/65‑1 (MQ=255)
ttCAACGATTCAAGAAACAGCAGTTCGTAATTAGGCCCGGTCATCAGTTCAGGATCTGACATcc < 1:293877/64‑1 (MQ=255)
|
GGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCC > W3110S.gb/1496230‑1496316
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
