Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,374,409 |
A→G |
intergenic (‑65/‑315) |
nanR ← / → dcuD |
DNA‑binding transcriptional dual regulator/predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,374,409 | 0 | A | G | 100.0%
| 282.5
/ NA
| 74 | intergenic (‑65/‑315) | nanR/dcuD | DNA‑binding transcriptional dual regulator/predicted transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (24/50); total (24/50) |
TTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGAATAAT > W3110S.gb/3374363‑3374461
|
ttAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTctct > 1:761572/1‑64 (MQ=255)
ttAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:1086566/1‑65 (MQ=255)
ttAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:710917/1‑65 (MQ=255)
ttAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:335920/1‑65 (MQ=255)
ttAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:2179014/1‑65 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:164420/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:2116205/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:1698011/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:1817370/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:1880101/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:1935358/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:1004833/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:2148004/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:2184456/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:2295862/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:386698/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:387618/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:457070/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:757608/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:856208/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:1089562/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:1635880/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:1605853/1‑62 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCtt > 1:1133408/1‑62 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGTAGGGTTTTCTCTTTGTGcc < 1:538769/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1193578/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2283927/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1643955/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2297738/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2303126/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2336493/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2444313/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2490827/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2504394/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:314342/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1281210/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:350227/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:397849/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1292083/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:552350/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1157033/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1128862/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:761696/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:811743/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:98777/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2264174/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1690145/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:169350/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1904253/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1568880/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1937148/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2013342/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2022695/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2278322/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2224826/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1553411/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:155727/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1498092/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGAGcc < 1:2198365/65‑1 (MQ=255)
catcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1345046/64‑1 (MQ=255)
acaGGATTGTAAGTAGGGGAAGATGGCAGTGTTTTCTCTTTGTGcc < 1:1245154/46‑1 (MQ=255)
aGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:374535/44‑1 (MQ=255)
aaGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaataat < 1:1954245/64‑1 (MQ=255)
aaGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaataat < 1:854050/64‑1 (MQ=255)
aaGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaataat < 1:1715499/64‑1 (MQ=255)
aaGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaataat < 1:1831282/64‑1 (MQ=255)
aaGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaataat < 1:609556/64‑1 (MQ=255)
aaGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaataat < 1:49088/64‑1 (MQ=255)
aaGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaataat < 1:2001292/64‑1 (MQ=255)
aaGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaataat < 1:127212/64‑1 (MQ=255)
aaGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaataat < 1:212295/64‑1 (MQ=255)
aaGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaataat < 1:2034142/64‑1 (MQ=255)
aaGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaataat < 1:2060087/64‑1 (MQ=255)
aaGTAGGGGAAGATGGCAGGGGTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaataat < 1:162034/64‑1 (MQ=255)
|
TTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGAATAAT > W3110S.gb/3374363‑3374461
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
