Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
354 |
41.7 |
3110465 |
93.1% |
2895842 |
61.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,374,409 |
A→G |
intergenic (‑65/‑315) |
nanR ← / → dcuD |
DNA‑binding transcriptional dual regulator/predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,374,409 | 0 | A | G | 100.0%
| 213.6
/ NA
| 58 | intergenic (‑65/‑315) | nanR/dcuD | DNA‑binding transcriptional dual regulator/predicted transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (49/9); total (49/9) |
AAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGA > W3110S.gb/3374350‑3374456
|
aaGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGc > 1:1091652/1‑65 (MQ=255)
aaGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGc > 1:2469097/1‑65 (MQ=255)
aaGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGc > 1:2426518/1‑65 (MQ=255)
aaGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGc > 1:2843182/1‑65 (MQ=255)
aaGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGc > 1:2271161/1‑65 (MQ=255)
aaGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGc > 1:376076/1‑65 (MQ=255)
aaGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGc > 1:485892/1‑65 (MQ=255)
aaGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGc > 1:572013/1‑65 (MQ=255)
aaGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGc > 1:1356915/1‑65 (MQ=255)
aaGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGc > 1:1108524/1‑65 (MQ=255)
aaGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGc > 1:851199/1‑65 (MQ=255)
tAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCttt > 1:630408/1‑65 (MQ=255)
tAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCttt > 1:1003162/1‑65 (MQ=255)
tAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCttt > 1:761220/1‑65 (MQ=255)
tAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCttt > 1:1691389/1‑65 (MQ=255)
tAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCttt > 1:1725682/1‑65 (MQ=255)
tAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCttt > 1:1226221/1‑65 (MQ=255)
tAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCttt > 1:23475/1‑65 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCttt > 1:1947710/1‑63 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTtgt > 1:2844044/1‑65 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTtgt > 1:2577393/1‑65 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTtgt > 1:2778169/1‑65 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTtgt > 1:2360414/1‑65 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTtgt > 1:896862/1‑65 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTtgt > 1:2183772/1‑65 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTtgt > 1:136926/1‑65 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTtgt > 1:484130/1‑65 (MQ=255)
aCATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTtgt > 1:1459346/1‑65 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:2508596/65‑1 (MQ=255)
tcatcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1410471/65‑1 (MQ=255)
catcaGTGACATCCTATCACAGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGcc < 1:1218858/64‑1 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:2440548/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:824457/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:1265130/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:660079/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:1629687/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:167091/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:475003/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:347769/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:3033518/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:3027706/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:3003933/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:2034596/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:2444495/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:2314031/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:2600360/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:26348/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:2726479/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:2372107/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:27657/1‑65 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGCAGGGGTTTCTCTTTGTGCCTCATCATTACCATAAt > 1:2945059/1‑63 (MQ=255)
cacaGGATTGAAAGTAGGGGAAGATGGAAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTa > 1:917725/1‑65 (MQ=255)
gATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGa < 1:173676/65‑1 (MQ=255)
gATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGa < 1:1826897/65‑1 (MQ=255)
gATTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGa < 1:879313/65‑1 (MQ=255)
aTTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGa < 1:525708/64‑1 (MQ=255)
aTTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGa < 1:2802812/64‑1 (MQ=255)
aTTGAAAGTAGGGGAAGATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGa < 1:1189500/64‑1 (MQ=255)
|
AAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGA > W3110S.gb/3374350‑3374456
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
