Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,269,468 |
(A)7→8 |
intergenic (‑18/‑282) |
uvrC ← / → yedP |
excinuclease UvrABC, endonuclease subunit/conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,269,461 | 1 | . | A | 100.0%
| 19.4
/ NA
| 8 | intergenic (‑11/‑289) | uvrC/yedP | excinuclease UvrABC, endonuclease subunit/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (8/0); total (8/0) |
GCCGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑AAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCAC > minE/1269400‑1269516
|
gCCGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑aaaaaaaat > 1:1703394/1‑69 (MQ=255)
gCCGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑aaaaaaaat > 1:2112501/1‑69 (MQ=255)
gCCGGAATGCACAATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCAc > 1:1221271/1‑71 (MQ=255)
gCCGGAATGCACAATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCAc > 1:1933150/1‑71 (MQ=255)
gCCGGAATGCACAATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCAc > 1:2230795/1‑71 (MQ=255)
gCCGGAATGCACAATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCAc > 1:271860/1‑71 (MQ=255)
gCCGGAATGCACAATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCAc > 1:2753184/1‑71 (MQ=255)
gCCGGAATGCACAATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCAc > 1:35250/1‑71 (MQ=255)
gCCGGAATGCACAATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCAc > 1:723959/1‑71 (MQ=255)
gCCGGAATGCACAATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCAc > 1:981031/1‑71 (MQ=255)
|
GCCGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑AAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCAC > minE/1269400‑1269516
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
