Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I3 R2
|
122 |
64.1 |
3058059 |
97.6% |
2984665 |
63.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,269,468 |
(A)7→8 |
intergenic (‑18/‑282) |
uvrC ← / → yedP |
excinuclease UvrABC, endonuclease subunit/conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,269,461 | 1 | . | A | 100.0%
| 24.8
/ NA
| 10 | intergenic (‑11/‑289) | uvrC/yedP | excinuclease UvrABC, endonuclease subunit/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (6/4); total (6/4) |
GTTAAGGCCGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑AAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAAT > minE/1269394‑1269525
|
gTTAAGGCCGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑aa > 1:471602/1‑70 (MQ=255)
gTTAAGGCCGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑aa < 1:1595932/70‑1 (MQ=255)
tAAGGCCGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑aaaa > 1:1824599/1‑70 (MQ=255)
aGGCCGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑aaaaaaa < 1:1578832/71‑1 (MQ=255)
aGGCCGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑aaaaaaa < 1:1749945/71‑1 (MQ=255)
aGGCCGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑aaaaaaa < 1:458076/71‑1 (MQ=255)
cGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑aaaa < 1:2224065/64‑1 (MQ=255)
cgccgcATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAATAAAAAAAATCCCGa < 1:2446938/71‑1 (MQ=255)
cATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑aaaaaaaa > 1:2447359/1‑59 (MQ=255)
cATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑aaaaaaaa > 1:2450867/1‑59 (MQ=255)
cATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑aaaaaaaa > 1:347017/1‑59 (MQ=255)
gcgcgAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAATAAAAAAAATCCCGACCCt < 1:17340/61‑1 (MQ=255)
gTTTCAGATAACGCGCCCTATCGCCGGAATGCACAATAAAAAAAATCCCGa > 1:2215531/1‑51 (MQ=255)
tttCAGATAACGCGCCCTATCGCCGGAATGCACAATAAAAAAAATCCCGa < 1:373980/50‑1 (MQ=255)
ttCAGATAACGCGCCCTATCGCCGGAATGCACAATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGaaa > 1:727875/1‑71 (MQ=255)
cccTATCGCCGGAATGCACAATAAAAAAAATCCCGACCCTg < 1:1429311/41‑1 (MQ=38)
tCGCCGGAATGCACAATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGc > 1:1065017/1‑64 (MQ=255)
aTGCACAATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTaaa > 1:2347/1‑70 (MQ=255)
tGCACAATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTaaaa > 1:2228556/1‑70 (MQ=255)
cacaATAAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAAt > 1:888346/1‑71 (MQ=255)
|
GTTAAGGCCGTCGCCGCATTGGTGCGCGCGAGTTTCAGATAACGCGCCCTATCGCCGGAATGCACAAT‑AAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAAT > minE/1269394‑1269525
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
