Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,695,295 |
G→A |
Q239* (CAG→TAG) |
yfhQ ← |
predicted methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,695,295 | 0 | G | A | 100.0%
| 242.6
/ NA
| 73 | Q239* (CAG→TAG) | yfhQ | predicted methyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (64/9); total (64/9) |
CGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGC > minE/1695239‑1695351
|
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:1849614/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:2595288/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:2526491/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:2303425/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:2252500/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:2673935/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:2220864/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:272956/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:2143164/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:3024001/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:1992734/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:3033536/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:1942307/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:3092312/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:3107017/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:436530/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:454115/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:3193843/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:553209/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:559544/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:784255/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:1322485/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:1279139/1‑71 (MQ=255)
cGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAg > 1:569562/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:959163/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:809868/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:2612197/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:702882/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:700066/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:2706663/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:2830506/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:2924598/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:2953214/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:48865/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:48626/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:2596698/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:1711428/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:1051961/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:1129553/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:1214636/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:1673582/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:1761161/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGaa > 1:2079121/1‑71 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGa > 1:2896888/1‑70 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGa > 1:199944/1‑70 (MQ=255)
aCGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGa > 1:902465/1‑70 (MQ=255)
aaCGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGatat > 1:3151581/1‑70 (MQ=255)
aaCGGCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATAtt > 1:2704424/1‑71 (MQ=255)
gCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAAc < 1:2122288/71‑1 (MQ=255)
gCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAAc < 1:2477105/71‑1 (MQ=255)
gCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAAc < 1:930425/71‑1 (MQ=255)
gCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAAc < 1:83852/71‑1 (MQ=255)
gCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAAc < 1:581715/71‑1 (MQ=255)
gCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAAc < 1:1256017/71‑1 (MQ=255)
gCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAAc < 1:1395362/71‑1 (MQ=255)
gCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAAc < 1:1824577/71‑1 (MQ=255)
gCTGTTATTCGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAAc < 1:2148797/71‑1 (MQ=255)
cGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt > 1:459946/1‑63 (MQ=255)
cGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt > 1:2033098/1‑63 (MQ=255)
cGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt > 1:3011549/1‑63 (MQ=255)
cGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt > 1:1975470/1‑63 (MQ=255)
cGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt > 1:1085143/1‑63 (MQ=255)
cGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt > 1:1097744/1‑63 (MQ=255)
cGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt > 1:392348/1‑63 (MQ=255)
cGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt > 1:505404/1‑63 (MQ=255)
cGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt > 1:1559603/1‑63 (MQ=255)
cGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt > 1:1623167/1‑63 (MQ=255)
cGGCCTTGTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACt > 1:2180794/1‑63 (MQ=255)
gTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCgg > 1:1041270/1‑69 (MQ=255)
gTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgc > 1:1808159/1‑71 (MQ=255)
gTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgc > 1:2243220/1‑71 (MQ=255)
gTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgc > 1:1502727/1‑71 (MQ=255)
gTTACCTTTATTCTACTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgc > 1:815282/1‑71 (MQ=255)
|
CGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGC > minE/1695239‑1695351
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
