Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,450,298 |
A→G |
W78R (TGG→CGG) |
yifE ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,450,298 | 0 | A | G | 100.0%
| 817.9
/ NA
| 214 | W78R (TGG→CGG) | yifE | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (77/137); total (77/137) |
Only 100 of 214 total aligned reads displayed.
ACCGCCGGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCACACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTC > minE/2450239‑2450364
|
aCCGCCGGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:3201083/70‑1 (MQ=255)
aCCGCCGGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:1466919/70‑1 (MQ=255)
aCCGCCGGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:3000514/70‑1 (MQ=255)
aCCGCCGGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:824538/70‑1 (MQ=255)
aCCGCCGGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:2658023/70‑1 (MQ=255)
aCCGCCGGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:1930166/70‑1 (MQ=255)
aCCGCCGGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:1749524/70‑1 (MQ=255)
aCCGCCGGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:1182907/70‑1 (MQ=255)
aCCGCCGGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:351337/70‑1 (MQ=255)
aCCGCCGGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:682828/70‑1 (MQ=255)
ccgccgGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:1820265/69‑1 (MQ=255)
ccgccgGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:1364719/69‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:286288/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:30197/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:2724743/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:262053/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:2394707/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:7148/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:879324/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:2375001/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:1353791/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:882325/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:1269186/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:332157/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:1171160/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:2327349/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:368187/71‑1 (MQ=255)
cGTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTc < 1:2203628/71‑1 (MQ=255)
gTTTTGGACGCTTAATACGCGTCATATACTTGGACCGCACGCGTTCt < 1:1640345/47‑1 (MQ=255)
aaTACGTGTCATATACTTGGACCGCACGCGTTCTGCt < 1:2750138/37‑1 (MQ=38)
aaTACGCGTCATATACTTGGACCGCACGCGTTCTGCt < 1:1502162/37‑1 (MQ=255)
aaTACGCGTCATATACTTGGACCGCACGCGTTCTGCt < 1:1613435/37‑1 (MQ=255)
aaTACGCGTCATATACTTGGACCGCACGCGTTCTGCt < 1:2912529/37‑1 (MQ=255)
aaTACGCGTCATATACTTGGACCGCACGCGTTCTGCt < 1:1400644/37‑1 (MQ=255)
aaTACGCGTCATATACTTGGACCGCACGCGTTCTGCt < 1:31810/37‑1 (MQ=255)
aaTACGCGTCATATACTTGGACCGCACGCGTTCTGCt < 1:1155838/37‑1 (MQ=255)
aaTACGCGTCATATACTTGGACCGCACGCGTTCTGCt < 1:409833/37‑1 (MQ=255)
aTACGCGTCATATACTTGGACCGCACGCGTTCTGCt < 1:2276888/36‑1 (MQ=255)
tACGCGTCATATACTTGGACCGCACGCGTTCTGCTTc > 1:2075244/1‑37 (MQ=255)
tACGCGTCATATACTTGGACCGCACGCGTTCTGCTTc > 1:2215329/1‑37 (MQ=255)
tACGCGTCATATACTTGGACCGCACGCGTTCTGCTTc > 1:3268600/1‑37 (MQ=255)
tACGCGTCATATACTTGGACCGCACGCGTTCTGCTTc > 1:3072672/1‑37 (MQ=255)
tACGCGTCATATACTTGGACCGCACGCGTTCTGCTTc > 1:1958691/1‑37 (MQ=255)
tACGCGTCATATACTTGGACCGCACGCGTTCTGCTTc > 1:2991347/1‑37 (MQ=255)
tACGCGTCATATACTTGGACCGCACGCGTTCTGCTTc > 1:1842749/1‑37 (MQ=255)
tACGCGTCATATACTTGGACCGCACGCGTTCTGCTTc > 1:1884111/1‑37 (MQ=255)
tACGCGTCATATACTTGGACCGCACGCGTTCTGCTTc > 1:2572796/1‑37 (MQ=255)
tCATATACTTGGACCGCACGCGTTCTGCTTCTGTc < 1:2137754/35‑1 (MQ=255)
tCATATACTTGGACCGCACGCGTTCTGCTTCTGTc < 1:921590/35‑1 (MQ=255)
tCATATACTTGGACCGCACGCGTTCTGCTTCTGTc < 1:519002/35‑1 (MQ=255)
tCATATACTTGGACCGCACGCGTTCTGCTTCTGTc < 1:1302407/35‑1 (MQ=255)
tCATATACTTGGACCGCACGCGTTCTGCTTCTGTc < 1:173467/35‑1 (MQ=255)
tCATATACTTGGACCGCACGCGTTCTGCTTCTGTc < 1:1861324/35‑1 (MQ=255)
tCATATACTTGGACCGCACGCGTTCTGCTTCTGTc < 1:1998051/35‑1 (MQ=255)
tCATATACTTGGACCGCACGCGTTCTGCTTCTGTc < 1:224165/35‑1 (MQ=255)
tCATATACTTGGACCGCACGCGTTCTGCTTCTGTc < 1:2281162/35‑1 (MQ=255)
tCATATACTTGGACCGCACGCGTTCTGCTTCTGTc < 1:1926263/35‑1 (MQ=255)
tCATATACTTGGACCGCACGCGTTCTGCTTCTGTc < 1:817597/35‑1 (MQ=255)
taCTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGttt > 1:2460722/1‑71 (MQ=255)
taCTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGttt > 1:1448099/1‑71 (MQ=255)
taCTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGtt > 1:1006692/1‑70 (MQ=255)
taCTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGtt > 1:1538497/1‑70 (MQ=255)
taCTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGtt > 1:573396/1‑70 (MQ=255)
taCTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGtt > 1:2389969/1‑70 (MQ=255)
taCTTGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGtt > 1:2324144/1‑70 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTTTCACTGGCTCACGTTCGCAACGGCATACTGCTACGAAGAGTTTctct > 1:254886/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:1432724/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:2996440/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:2982577/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:2974326/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:1021663/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:2895606/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:1678152/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:631445/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:2809458/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:2797236/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:1763336/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:1891257/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:186573/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:2584639/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctct > 1:2471282/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTActct > 1:259771/1‑71 (MQ=255)
tGGACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACAGCTACGAAGAGTTTctct > 1:253073/1‑71 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTctctac < 1:1202209/71‑3 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:894385/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:936438/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:742501/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:2935271/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:2819044/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:2712461/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:2678027/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:2536949/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:243545/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:1542156/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:1490728/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:1336598/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:1289753/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:1084457/71‑1 (MQ=255)
gACCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:1033433/71‑1 (MQ=255)
aCCGCACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTc < 1:3228435/70‑1 (MQ=255)
|
ACCGCCGGAAAGGGTGTGAAAACGTTTTGGACGCTTAATACGCGTCATATACTTGGACCACACGCGTTCTGCTTCTGTCACTGGCTCACGTTCGCCACGGCATACTGCTACGAAGAGTTTCTCTTC > minE/2450239‑2450364
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
