Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R2
|
356 |
55.1 |
4139924 |
95.4% |
3949487 |
63.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
927,929 |
C→T |
Q563Q (CAG→CAA) |
cydC ← |
fused cysteine transporter subunits and membrane component and ATP‑binding component of ABC superfamily |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 927,929 | 0 | C | T | 100.0%
| 71.7
/ NA
| 23 | Q563Q (CAG→CAA) | cydC | fused cysteine transporter subunits and membrane component and ATP‑binding component of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (18/5); total (18/5) |
CAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCCTGTCTGGCAAGCAGTTCTGCGTGAGTACCTTGCTCAATAATTTGCCCGTTGTCCAT > W3110S.gb/927872‑927985
|
cAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAg > 1:1735265/1‑69 (MQ=255)
cAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAg > 1:339710/1‑69 (MQ=255)
cAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAg > 1:2511142/1‑69 (MQ=255)
cAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCa > 1:4075060/1‑57 (MQ=255)
cAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCa > 1:458392/1‑57 (MQ=255)
cAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCa > 1:4038634/1‑57 (MQ=255)
cAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCa > 1:513628/1‑57 (MQ=255)
cAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCa > 1:2456951/1‑57 (MQ=255)
cAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCa > 1:2406987/1‑57 (MQ=255)
cAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCa > 1:2334118/1‑57 (MQ=255)
cAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCa > 1:913975/1‑57 (MQ=255)
cAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCa > 1:955251/1‑57 (MQ=255)
taataGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCAGTTCTGCGTGAGTACCt < 1:2525381/71‑1 (MQ=255)
taataGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCAGTTCTGCGTGAGTACCt < 1:761885/71‑1 (MQ=255)
taataGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCAGTTCTGCGTGAGTACCt < 1:2263599/71‑1 (MQ=255)
taataGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCAGTTCTGCGTGAGTACCt < 1:4015156/71‑1 (MQ=255)
taataGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCAGTTCTGCGTGAGTACCt < 1:1828922/71‑1 (MQ=255)
ataGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCAGTTCTGCGTGAGTACCtt > 1:2854354/1‑70 (MQ=255)
ataGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCTTGTCTGGCAAGCAGTTCTGCGTGAGTACCTTg > 1:105134/1‑71 (MQ=255)
aaCGCCCTTGTCTGGCAAGCAGTTCTGCGTGAGTACCTTGCTCaataat > 1:1029295/1‑49 (MQ=255)
aaCGCCCTTGTCTGGCAAGCAGTTCTGCGTGAGTACCTTGCTCaataa > 1:4039531/1‑48 (MQ=255)
aCGCCCTTGTCTGGCAAGCAGTTCTGCGTGAGTACCTTGCTCAATAATTTGCCCGt > 1:2858024/1‑56 (MQ=255)
aCGCCCTTGTCTGGCAAGCAGTTCTGCGTGAGTACCTTGCTCAATAATTTGCCCGTTGTCCAt > 1:1888625/1‑63 (MQ=255)
|
CAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCCTGTCTGGCAAGCAGTTCTGCGTGAGTACCTTGCTCAATAATTTGCCCGTTGTCCAT > W3110S.gb/927872‑927985
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
