Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R2
|
356 |
55.1 |
4139924 |
95.4% |
3949487 |
63.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,927,287 |
T→C |
L45P (CTT→CCT) |
yobB → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,927,287 | 0 | T | C | 100.0%
| 196.8
/ NA
| 54 | L45P (CTT→CCT) | yobB | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (42/12); total (42/12) |
ATCATCTGGAGTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCTTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCACT > W3110S.gb/1927224‑1927347
|
atcatcTGGAGTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGccttcttt < 1:2380933/70‑1 (MQ=255)
aGTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTTGTTTTTCCATCGCCTTCTTTACTGGGgtgt < 1:80556/71‑1 (MQ=255)
aGTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGgtgt < 1:425910/71‑1 (MQ=255)
aGTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGgtgt < 1:4082095/71‑1 (MQ=255)
aGTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGgtgt < 1:1370414/71‑1 (MQ=255)
gTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGgtgt > 1:1618712/1‑70 (MQ=255)
gTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGgtgt > 1:1636216/1‑70 (MQ=255)
gTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGgtgt > 1:1227842/1‑70 (MQ=255)
gTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGtgtg < 1:2675080/71‑1 (MQ=255)
gTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGtgtg < 1:1178708/71‑1 (MQ=255)
tttGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGccttcttt < 1:2912027/59‑1 (MQ=255)
tttGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGccttcttt < 1:3625728/59‑1 (MQ=255)
tttGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGccttcttt < 1:3410871/59‑1 (MQ=255)
tttGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGtgtg < 1:2075443/70‑1 (MQ=255)
tgtgAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGat < 1:3422994/70‑1 (MQ=255)
gAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGgtgt < 1:1375386/64‑1 (MQ=255)
gccgccgccAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTcgc > 1:1214301/1‑70 (MQ=255)
gccgccgccAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTcgc > 1:158672/1‑70 (MQ=255)
aGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCt < 1:1541963/71‑1 (MQ=255)
aGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCt < 1:2715479/71‑1 (MQ=255)
aacaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGgtgt < 1:4098206/47‑1 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTcgc > 1:4030493/1‑56 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACTTGCCCTTcc > 1:1195778/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:3546018/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:2441251/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:3786432/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:3021201/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:3992271/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:2715776/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:1007525/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:1430946/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:588423/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:436103/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:1900359/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:429667/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:2712956/1‑69 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTc > 1:1563435/1‑68 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCt > 1:420742/1‑70 (MQ=255)
acaaTGTCAGCTGTTAGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTg > 1:2037478/1‑71 (MQ=255)
aGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:4048841/1‑54 (MQ=255)
aGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:3829862/1‑54 (MQ=255)
aGTTTTTCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTcc > 1:2719662/1‑54 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGattatt > 1:3776187/1‑35 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCGCTTCCTGCCCCACCCGATCTCTCAc > 1:3011986/1‑71 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCt > 1:844845/1‑52 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTGc > 1:2310255/1‑54 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCa > 1:3980770/1‑70 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCAc > 1:4054628/1‑71 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCAc > 1:3187240/1‑71 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCAc > 1:3117814/1‑71 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCAc > 1:3113031/1‑71 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCAc > 1:2832615/1‑71 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCAc > 1:1815708/1‑71 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCAc > 1:1091089/1‑71 (MQ=255)
ttttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTG‑CCTTCCTGCCCCACCCGATCTCTCACt > 1:4092340/1‑71 (MQ=255)
tttCCATCGCCTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCACt > 1:1289014/1‑71 (MQ=255)
tttCCATCGCCTTCTTTACTGGGGTGTGATTATTAGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCACt > 1:1484519/1‑71 (MQ=255)
tttCCATCGCCTTCTTTACTGGGGTGTGATAATTCGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCACt > 1:3195414/1‑71 (MQ=255)
|
ATCATCTGGAGTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCTTTCTTTACTGGGGTGTGATTATTCGCGACGTGCCCTTCCTGCCCCACCCGATCTCTCACT > W3110S.gb/1927224‑1927347
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
