Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R2
|
328 |
63.0 |
4687567 |
98.0% |
4593815 |
65.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,810,369 |
C→T |
V368V (GTG→GTA) |
yicE ← |
predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,810,369 | 0 | C | T | 100.0%
| 191.8
/ NA
| 63 | V368V (GTG→GTA) | yicE | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (38/25); total (38/25) |
GGTGCCAAACATTACAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTCACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGACATAGCGGCTGGCAA > W3110S.gb/3810303‑3810436
|
ggTGCCAAACATTACAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTg > 1:3021255/1‑71 (MQ=255)
ggTGCCAAACATTACAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTg > 1:2294382/1‑71 (MQ=255)
gTGACAAACATTACAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTg < 1:560423/70‑1 (MQ=255)
cAAACATTACAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCggg < 1:1748050/71‑1 (MQ=255)
aaaCATTACAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCggg > 1:3943227/1‑70 (MQ=255)
cATTACAAGCGTTGCGCCGCCCAGAACCCGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGaa > 1:241445/1‑69 (MQ=255)
tACAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGa < 1:653529/70‑1 (MQ=255)
tACAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGAc > 1:1419375/1‑71 (MQ=255)
tACAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGAc > 1:2759395/1‑71 (MQ=255)
aCAAGCGTTGCGCCGGCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGAcc > 1:2625886/1‑71 (MQ=255)
aCAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGccc > 1:2912069/1‑71 (MQ=255)
aCAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGAcc > 1:4303768/1‑71 (MQ=255)
aCAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGAcc > 1:1923616/1‑71 (MQ=255)
aCAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGAcc > 1:4210329/1‑71 (MQ=255)
aCAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGAcc > 1:2062454/1‑71 (MQ=255)
aCAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGAcc > 1:3659768/1‑71 (MQ=255)
aCAAGCCTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGAcc > 1:593672/1‑71 (MQ=255)
aGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAg > 1:109068/1‑71 (MQ=255)
gcgcCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGa > 1:3074866/1‑70 (MQ=255)
cgccgcCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATc < 1:621361/71‑1 (MQ=255)
cgccgcCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATc < 1:3291594/71‑1 (MQ=255)
ccgccCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCaa < 1:839209/71‑1 (MQ=255)
cccAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGaa < 1:2946298/50‑1 (MQ=255)
cAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACAt > 1:1485875/1‑69 (MQ=255)
aaCCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAgcg > 1:2448663/1‑71 (MQ=255)
aCCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGc > 1:251806/1‑38 (MQ=255)
aCCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGaa > 1:3366955/1‑44 (MQ=255)
aCCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGaa > 1:3036304/1‑44 (MQ=255)
aCCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGAt > 1:4662961/1‑59 (MQ=255)
aCCGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAgcgc > 1:4462579/1‑71 (MQ=255)
ccGGTTCTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAgcgc > 1:2315807/1‑70 (MQ=255)
cTGGAATGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCgacgac > 1:3228325/1‑70 (MQ=255)
gAACGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACa < 1:1086063/68‑1 (MQ=255)
aaTGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAAc > 1:4441930/1‑71 (MQ=255)
aTGTGTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAAcc < 1:2929306/71‑1 (MQ=255)
tgtgTTGTACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCg < 1:1763587/71‑1 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACAt > 1:1827250/1‑50 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCa > 1:3154067/1‑52 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAg > 1:393386/1‑53 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa < 1:2998567/70‑1 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa < 1:1172429/70‑1 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa > 1:592329/1‑70 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa > 1:566235/1‑70 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa < 1:485856/70‑1 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa > 1:4475076/1‑70 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa > 1:4068388/1‑70 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa < 1:2152574/70‑1 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa < 1:2300401/70‑1 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa < 1:3613647/70‑1 (MQ=255)
tgttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa > 1:3429629/1‑70 (MQ=255)
ttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa < 1:2025868/68‑1 (MQ=255)
ttgtACAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGa < 1:2848896/68‑1 (MQ=255)
cAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAAcc > 1:291655/1‑61 (MQ=255)
cAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGACATAGCgg > 1:2379880/1‑71 (MQ=255)
cAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGACATAGCgg > 1:1037657/1‑71 (MQ=255)
cAAAACCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGACATAGCg < 1:2473716/70‑1 (MQ=255)
aaaCCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAAcc < 1:2818665/59‑1 (MQ=255)
aCCGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGACATAGCGGCTgg > 1:3232082/1‑71 (MQ=255)
ccGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGACATAGCGGCTGGc < 1:2658771/71‑1 (MQ=255)
ccGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGACATAGCGGCTGGc < 1:1610472/71‑1 (MQ=255)
ccGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGACATAGCGGCTGGc < 1:1532713/71‑1 (MQ=255)
cGCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGACATAGCGGCTGGc < 1:1567107/70‑1 (MQ=255)
gCTTACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGACATAGCGGCTGGCaa < 1:1678483/71‑1 (MQ=255)
|
GGTGCCAAACATTACAAGCGTTGCGCCGCCCAGAACCGGTTCTGGAATGTGTTGTACAAAACCGCTCACTGCCGGGAACAGACCCAGCACGATCAACATCAGCGCGACGACAAAACCGACATAGCGGCTGGCAA > W3110S.gb/3810303‑3810436
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
