Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,647,049 |
C→T |
Q102* (CAA→TAA) |
bcp → |
thiol peroxidase, thioredoxin‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,647,049 | 0 | C | T | 100.0%
| 223.7
/ NA
| 67 | Q102* (CAA→TAA) | bcp | thiol peroxidase, thioredoxin‑dependent |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (29/38); total (29/38) |
AGCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAG > minE/1646999‑1647113
|
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGAGCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:1807451/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:266487/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:3851158/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:3850453/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:3733714/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:3709716/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:370007/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:3689639/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:3655974/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:2964720/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:4309843/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:2684316/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:2234873/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:2120425/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:756449/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:115157/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:1404284/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:182079/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:1519543/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:1711092/65‑1 (MQ=255)
agCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:1696761/65‑1 (MQ=255)
gctgctTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgg < 1:4080540/64‑1 (MQ=255)
ctgctTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgggg > 1:1968860/1‑65 (MQ=255)
ctgctTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgggg > 1:3723766/1‑65 (MQ=255)
ctgctTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgggg > 1:1566976/1‑65 (MQ=255)
ctgctTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgggg > 1:4077779/1‑65 (MQ=255)
ctgctTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgggg > 1:3476754/1‑65 (MQ=255)
ctgctTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgggg > 1:3443179/1‑65 (MQ=255)
ctgctTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgggg > 1:1654293/1‑65 (MQ=255)
ctgctTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgggg > 1:4344681/1‑65 (MQ=255)
ctgctTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTgggg > 1:582602/1‑65 (MQ=255)
ctgctTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTAGGCGTCTgggg > 1:1418398/1‑65 (MQ=255)
aCTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCtt < 1:4088827/70‑1 (MQ=255)
aCTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCtt < 1:4323257/70‑1 (MQ=255)
aCTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCtt < 1:1619927/70‑1 (MQ=255)
aCTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCtt < 1:2383450/70‑1 (MQ=255)
aCTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCtt < 1:812331/70‑1 (MQ=255)
aCTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCtt < 1:140293/70‑1 (MQ=255)
aCTTTACGCTCCTGTCTGATGAGGACCACCAGGGGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCtt < 1:2900827/70‑1 (MQ=255)
cTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAAc < 1:4234048/71‑1 (MQ=255)
cTGTCTGATGAGGACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAAc < 1:3437399/71‑1 (MQ=255)
gACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATgg > 1:812615/1‑68 (MQ=255)
gACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATgg > 1:576513/1‑68 (MQ=255)
gACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATgg > 1:3947111/1‑68 (MQ=255)
gACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATgg > 1:2775967/1‑68 (MQ=255)
gACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATgg > 1:1239491/1‑68 (MQ=255)
gACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATgg > 1:1829055/1‑68 (MQ=255)
gACCACCAGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACCATgg > 1:2991157/1‑68 (MQ=255)
caccaGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAAc > 1:2911917/1‑56 (MQ=255)
accaGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCAt < 1:3956866/71‑1 (MQ=255)
accaGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCAt < 1:1897528/71‑1 (MQ=255)
accaGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCAt < 1:2433377/71‑1 (MQ=255)
aGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCAtt > 1:3999313/1‑65 (MQ=255)
aGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCAtt > 1:653749/1‑65 (MQ=255)
aGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCAtt > 1:641857/1‑65 (MQ=255)
aGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCAtt > 1:4377201/1‑65 (MQ=255)
aGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCAtt > 1:2548188/1‑65 (MQ=255)
aGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCAtt > 1:3924825/1‑65 (MQ=255)
aGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCAtt > 1:4283407/1‑65 (MQ=255)
aGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCAtt > 1:3525863/1‑65 (MQ=255)
aGGTGTGCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCAtt > 1:3985278/1‑65 (MQ=255)
tgCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAg < 1:455203/71‑1 (MQ=255)
tgCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAg < 1:204531/71‑1 (MQ=255)
tgCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAg > 1:3077129/1‑71 (MQ=255)
tgCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAg > 1:720182/1‑71 (MQ=255)
tgCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAg < 1:378254/71‑1 (MQ=255)
gCGAATAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAg < 1:3139324/70‑1 (MQ=255)
|
AGCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAG > minE/1646999‑1647113
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
