Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,680,754 |
T→C |
Y1407C (TAC→TGC) |
yfhM ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,680,754 | 0 | T | C | 100.0%
| 252.5
/ NA
| 66 | Y1407C (TAC→TGC) | yfhM | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (36/30); total (36/30) |
TAGCCAGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGTACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTCGCGCAGTG > minE/1680705‑1680820
|
tAGCCAGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGtt > 1:3233456/1‑71 (MQ=255)
tAGCCAGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGtt > 1:902787/1‑71 (MQ=255)
tAGCCAGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGtt > 1:3403718/1‑71 (MQ=255)
tAGCCAGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGtt > 1:1636039/1‑71 (MQ=255)
tAGCCAGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGtt > 1:2149400/1‑71 (MQ=255)
tAGCCAGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGtt > 1:4209699/1‑71 (MQ=255)
tAGCCAGCGTTCACCAAACGCCTGCTGCGAAAGTGTGCTCAGCAAAGTGCACTGCTCATCGGGTAGCAGtt > 1:4114503/1‑71 (MQ=255)
gCCAGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTa < 1:2596930/71‑1 (MQ=255)
gCCAGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTa < 1:57199/71‑1 (MQ=255)
gCCAGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTa < 1:2124379/71‑1 (MQ=255)
aGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAttt < 1:3010056/71‑1 (MQ=255)
aGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAttt < 1:4016543/71‑1 (MQ=255)
aGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAttt < 1:4108574/71‑1 (MQ=255)
aGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAttt < 1:2055748/71‑1 (MQ=255)
aGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAttt < 1:1805934/71‑1 (MQ=255)
aGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAttt < 1:486663/71‑1 (MQ=255)
cACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTttcttc > 1:3553567/1‑70 (MQ=255)
cACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTttcttc > 1:1039213/1‑70 (MQ=255)
cACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTttcttc > 1:3374732/1‑70 (MQ=255)
cACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTttcttc > 1:3440843/1‑70 (MQ=255)
cACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTttcttc > 1:2761436/1‑70 (MQ=255)
cAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAg > 1:1307569/1‑70 (MQ=255)
cAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAg > 1:65010/1‑70 (MQ=255)
cAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAg > 1:2613466/1‑70 (MQ=255)
cAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAg > 1:459953/1‑70 (MQ=255)
cAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAg > 1:4314045/1‑70 (MQ=255)
aaCGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGc > 1:377219/1‑69 (MQ=255)
aaCGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGc > 1:4181124/1‑69 (MQ=255)
aaCGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGc > 1:4176415/1‑69 (MQ=255)
aaCGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGc > 1:886061/1‑69 (MQ=255)
aaCGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGc > 1:4252706/1‑69 (MQ=255)
aaCGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGc > 1:92926/1‑69 (MQ=255)
aaCGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGc > 1:2991635/1‑69 (MQ=255)
aaCGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGc > 1:1259548/1‑69 (MQ=255)
aaCGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGc > 1:165379/1‑69 (MQ=255)
aCGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAg < 1:4040838/71‑1 (MQ=255)
aaGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAAcg < 1:2871858/71‑1 (MQ=255)
aaGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAAcg < 1:106268/71‑1 (MQ=255)
aaGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAAcg < 1:3501337/71‑1 (MQ=255)
aaGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAAcg < 1:1631916/71‑1 (MQ=255)
aaGTGTGTTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAAcg < 1:1637372/71‑1 (MQ=255)
tgtTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAtttt > 1:2204498/1‑42 (MQ=255)
tgtTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAtttt > 1:492370/1‑42 (MQ=255)
tgtTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAtttt > 1:4266609/1‑42 (MQ=255)
tgtTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAtttt > 1:1858826/1‑42 (MQ=255)
tgtTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAtttt > 1:2228688/1‑42 (MQ=255)
tgtTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAtttt > 1:2330488/1‑42 (MQ=255)
tgtTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAtttt > 1:286510/1‑42 (MQ=255)
tgtTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAtttt > 1:394786/1‑42 (MQ=255)
tgtTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAtttt > 1:3607547/1‑42 (MQ=255)
tgtTCAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTAtttt > 1:3735165/1‑42 (MQ=255)
cAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTcg < 1:2438836/70‑1 (MQ=255)
cAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTcg < 1:107560/70‑1 (MQ=255)
cAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTcg < 1:664294/70‑1 (MQ=255)
cAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTcg < 1:1537869/70‑1 (MQ=255)
cAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTcg < 1:2554858/70‑1 (MQ=255)
cAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTcg < 1:2524624/70‑1 (MQ=255)
cAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTcg < 1:1957463/70‑1 (MQ=255)
cAGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTcg < 1:4031365/70‑1 (MQ=255)
aGCAAAGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTcg < 1:2797029/69‑1 (MQ=255)
aaaGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTCGCGCAg < 1:165434/71‑1 (MQ=255)
aGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTCGCGCAGTg < 1:3875729/71‑1 (MQ=255)
aGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTCGCGCAGTg < 1:494573/71‑1 (MQ=255)
aGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTCGCGCAGTg < 1:3047851/71‑1 (MQ=255)
aGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTCGCGCAGTg < 1:1045195/71‑1 (MQ=255)
aGTGCACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAAAGCATTAACGCGTTGTCGCGCAGTg < 1:693673/71‑1 (MQ=255)
|
TAGCCAGCGTTCACCAAACGCCTGCTGCGAAAGTGTGTTCAGCAAAGTGTACTGCTCATCGGGTAGCAGTTTATTTTCTTCCAGCAAGGAGAGCATTAACGCGTTGTCGCGCAGTG > minE/1680705‑1680820
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
