Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,784,184 |
T→C |
I223T (ATA→ACA) |
yfjB → |
NAD kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,784,184 | 0 | T | C | 100.0%
| 999.3
/ NA
| 255 | I223T (ATA→ACA) | yfjB | NAD kinase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (143/112); total (143/112) |
Only 100 of 255 total aligned reads displayed.
CATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCATAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATCAGTTGC > minE/1784146‑1784248
|
cATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGttttt < 1:2387743/71‑1 (MQ=255)
cATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGttttt < 1:1630232/71‑1 (MQ=255)
cATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGttttt < 1:1534881/71‑1 (MQ=255)
cATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGttttt < 1:1934099/71‑1 (MQ=255)
cATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGttttt < 1:635973/71‑1 (MQ=255)
cATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGttttt < 1:4310120/71‑1 (MQ=255)
tGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGa < 1:2706468/54‑1 (MQ=255)
tGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGa < 1:118858/54‑1 (MQ=255)
tGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGa < 1:3556988/54‑1 (MQ=255)
tGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGa < 1:2483389/54‑1 (MQ=255)
tGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGa < 1:1093469/54‑1 (MQ=255)
tGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGa < 1:4252639/54‑1 (MQ=255)
tGTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGa < 1:3327125/54‑1 (MQ=255)
gTTCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGa < 1:1289703/53‑1 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGa > 1:1703613/1‑52 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATc > 1:3325712/1‑54 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATc > 1:2245531/1‑54 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATc > 1:1574148/1‑54 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATc > 1:1502338/1‑54 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATc > 1:1221046/1‑54 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATc > 1:3661457/1‑54 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATc > 1:89399/1‑54 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGc > 1:1405367/1‑70 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:3941279/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:3903446/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:3171295/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:2980684/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:1046000/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:2755377/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:3601662/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:2429076/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:4370234/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:1899208/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:825985/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:588473/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:2116754/1‑71 (MQ=255)
ttCCCGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:1610/1‑71 (MQ=255)
ttCCCGCATACGTTCTCAGCACGACCACTGGTCACAAACagcagcagc > 1:500606/1‑48 (MQ=39)
ttCCCACATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCa > 1:4167267/1‑71 (MQ=255)
cccGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATc > 1:253153/1‑71 (MQ=255)
cccGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATc > 1:2932512/1‑71 (MQ=255)
cccGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATc > 1:690349/1‑71 (MQ=255)
cccGCATACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATc > 1:1748242/1‑71 (MQ=255)
tACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGc < 1:1100488/62‑1 (MQ=255)
tACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGc < 1:398106/62‑1 (MQ=255)
tACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGc < 1:3838269/62‑1 (MQ=255)
tACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGc < 1:849127/62‑1 (MQ=255)
tACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGc < 1:228606/62‑1 (MQ=255)
tACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGc < 1:1807887/62‑1 (MQ=255)
tACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGc < 1:478174/67‑1 (MQ=255)
tACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGc < 1:2916639/67‑1 (MQ=255)
tACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGc < 1:19715/67‑1 (MQ=255)
tACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGc < 1:2009893/67‑1 (MQ=255)
tACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGc < 1:349130/67‑1 (MQ=255)
tACGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGc < 1:377450/67‑1 (MQ=255)
aCGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGc < 1:3456491/61‑1 (MQ=255)
cGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACg > 1:4197440/1‑41 (MQ=255)
cGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTg > 1:2334013/1‑50 (MQ=255)
cGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCAt > 1:731064/1‑62 (MQ=255)
cGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCAt > 1:2784769/1‑62 (MQ=255)
cGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCg > 1:3096233/1‑67 (MQ=255)
cGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCg > 1:465315/1‑67 (MQ=255)
cGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCg > 1:3259313/1‑67 (MQ=255)
cGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCg > 1:4286448/1‑67 (MQ=255)
cGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCg > 1:2606320/1‑67 (MQ=255)
cGTTGTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCg > 1:1411644/1‑67 (MQ=255)
gTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCTCATCGCCGTAACGAc < 1:2693982/70‑1 (MQ=255)
gTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGAc < 1:3446369/70‑1 (MQ=255)
gTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGAc < 1:1337082/70‑1 (MQ=255)
gTCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGAc < 1:2352371/70‑1 (MQ=255)
tCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGttttt < 1:2057529/52‑1 (MQ=255)
tCAGCACGACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGAc < 1:3048079/69‑1 (MQ=255)
cGACCACTGGTCACAAA‑‑‑CAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATc < 1:4094943/69‑1 (MQ=255)
gACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATc < 1:2880767/71‑1 (MQ=255)
gACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATc < 1:3827037/71‑1 (MQ=255)
gACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATc < 1:3746710/71‑1 (MQ=255)
gACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATc < 1:3189939/71‑1 (MQ=255)
gACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATc < 1:2083846/71‑1 (MQ=255)
gACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATc < 1:2212861/71‑1 (MQ=255)
gACCACTGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATc < 1:2829614/71‑1 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATc > 1:2378267/1‑45 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGa > 1:3103502/1‑55 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGaaa > 1:1080670/1‑63 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGaaa > 1:1640992/1‑63 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGaaa > 1:168540/1‑63 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGaaa > 1:1761532/1‑63 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGaaa > 1:1941935/1‑63 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGaaa > 1:2171393/1‑63 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGaaa > 1:2641379/1‑63 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGaaa > 1:2969730/1‑63 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGaaa > 1:3118511/1‑63 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGaaa > 1:3967975/1‑63 (MQ=255)
tGGTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATCAGTTGc > 1:2019492/1‑71 (MQ=255)
gTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATCAGTTGc < 1:2845099/69‑1 (MQ=255)
gTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATCAGTTGc < 1:66131/69‑1 (MQ=255)
gTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATCAGTTGc < 1:3392966/69‑1 (MQ=255)
gTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATCAGTTGc < 1:1734195/69‑1 (MQ=255)
gTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATCAGTTGc < 1:3530927/69‑1 (MQ=255)
gTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATCAGTTGc < 1:3877553/69‑1 (MQ=255)
gTCACAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATCAGTTGc < 1:3789186/69‑1 (MQ=255)
|
CATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCATAAACAGCAGCAGCACGATCCGTCTGCGTTTTTCGCATCGCCGTAACGACCTGGAAATCAGTTGC > minE/1784146‑1784248
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
