Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,512,887 |
G→A |
V27I (GTC→ATC) |
gltS → |
glutamate transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,512,887 | 0 | G | A | 100.0%
| 284.1
/ NA
| 87 | V27I (GTC→ATC) | gltS | glutamate transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (53/34); total (53/34) |
TCGATACTTTAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCGTCTCCTTTTTGAAGAAATACACCATACCGGAACCTGTTGCGGGTGGTTTGTTGG > minE/2512819‑2512941
|
tcGATACTTTAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCAtc > 1:1153393/1‑71 (MQ=255)
tcGATACTTTAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCAtc > 1:2648300/1‑71 (MQ=255)
tcGATACTTTAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCAtc > 1:4066436/1‑71 (MQ=255)
tcGATACTTTAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCAtc > 1:4051170/1‑71 (MQ=255)
tcGATACTTTAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCAtc > 1:4048229/1‑71 (MQ=255)
tcGATACTTTAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCAtc > 1:3132194/1‑71 (MQ=255)
tcGATACTTTAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCAtc > 1:2056411/1‑71 (MQ=255)
tcGATACTTTAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCAATTCCAtc > 1:2820924/1‑71 (MQ=255)
tACTTTAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt < 1:2868521/71‑1 (MQ=255)
ttggCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCttttt > 1:840475/4‑71 (MQ=255)
ttAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCttttt > 1:3489119/1‑71 (MQ=255)
ttAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCttttt > 1:2885241/1‑71 (MQ=255)
ttAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCttttt > 1:209071/1‑71 (MQ=255)
ttAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCttttt > 1:331735/1‑71 (MQ=255)
ttAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCttttt > 1:3341704/1‑71 (MQ=255)
ttAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCttttt > 1:170610/1‑71 (MQ=255)
ttAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCttttt > 1:1418106/1‑71 (MQ=255)
ttAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCttttt > 1:3662643/1‑71 (MQ=255)
ttAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCttttt > 1:3642945/1‑71 (MQ=255)
ttAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCttttt > 1:3631761/1‑71 (MQ=255)
ttAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCttttt > 1:1659163/1‑71 (MQ=255)
aaCGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTgaaga < 1:3135504/71‑1 (MQ=255)
aaCGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTgaaga < 1:3627299/71‑1 (MQ=255)
aaCGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTgaaga < 1:3411374/71‑1 (MQ=255)
aaCGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTgaaga < 1:2960017/71‑1 (MQ=255)
aaCGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTgaaga < 1:2404131/71‑1 (MQ=255)
aaCGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTgaaga < 1:2409023/71‑1 (MQ=255)
aaCGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTgaaga < 1:3764905/71‑1 (MQ=255)
aaCGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTgaaga < 1:3867599/71‑1 (MQ=255)
aaCGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTgaaga < 1:2788568/71‑1 (MQ=255)
aaCGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTgaaga < 1:731308/71‑1 (MQ=255)
aaCGCTTGTTGCAGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTgaaga < 1:2633761/71‑1 (MQ=255)
aCGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTgaaga < 1:1092109/70‑1 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTcc > 1:3249396/1‑59 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:4336571/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:3723399/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:1396927/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:3943283/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:4092595/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:4177473/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:4328145/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:3144744/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:2064966/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:4377776/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:550827/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:2902271/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:2885549/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:744771/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:2539633/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:1086023/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:890238/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:2568994/1‑60 (MQ=255)
cGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTCGTCCATTCCAtctc > 1:3127265/1‑58 (MQ=255)
cGCTTGATGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCt > 1:562695/1‑60 (MQ=255)
tcTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGaaa > 1:4216861/2‑70 (MQ=255)
gCTTGTTGCCGCAACGCTGCCGTTGCTGCTCGGGCGTATGTTGGTCCATTCCATCTCCTTTTTGAAGaaa > 1:1996425/1‑70 (MQ=255)
gCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGaaa > 1:1423059/1‑70 (MQ=255)
gCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGaaa > 1:1293106/1‑70 (MQ=255)
gCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGaaa > 1:1378083/1‑70 (MQ=255)
gCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGaaa > 1:1396537/1‑70 (MQ=255)
gCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGaaa > 1:1499726/1‑70 (MQ=255)
gCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGaaa > 1:3192597/1‑70 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:967020/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:2632244/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:885382/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:2543454/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:796515/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:2405857/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:2934839/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:3019384/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:2243484/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:3302394/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:1974629/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:1316421/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:1321622/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:1905320/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:3990474/71‑1 (MQ=255)
cTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:3851012/71‑1 (MQ=255)
aaCGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATa < 1:3227730/60‑1 (MQ=255)
aCGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATACACCATACCgg > 1:868574/1‑70 (MQ=255)
aCGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATACACCATACCgg > 1:1464749/1‑70 (MQ=255)
aCGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATACACCATACCg > 1:748428/1‑69 (MQ=255)
tAAGTTGGTCCATTCCATCTCCTTTTTGAAGAAATACACCATACCGGAACCTGTTGCGGGTGGTTTGTtgg > 1:2702481/1‑71 (MQ=255)
gTTGGTCCATTCCATCTCCTTTTTGAAGAAATACACCATACCGGAACCTGTTGCGggtggt < 1:2313022/61‑1 (MQ=255)
gTTGGTCCATTCCATCTCCTTTTTGAAGAAATACACCATACCGGAACCTGTTGCGggtggt < 1:2513691/61‑1 (MQ=255)
gTTGGTCCATTCCATCTCCTTTTTGAAGAAATACACCATACCGGAACCTGTTGCGggtggt < 1:1706733/61‑1 (MQ=255)
gTTGGTCCATTCCATCTCCTTTTTGAAGAAATACACCATACCGGAACCTGTTGCGggtggt < 1:1688701/61‑1 (MQ=255)
|
TCGATACTTTAGCAACGCTTGTTGCCGCAACGCTGACGTTGCTGCTCGGGCGTAAGTTGGTCCATTCCGTCTCCTTTTTGAAGAAATACACCATACCGGAACCTGTTGCGGGTGGTTTGTTGG > minE/2512819‑2512941
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
