Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F21 I0 R1
|
57 |
0.0 |
661283 |
90.4% |
597799 |
68.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,664,529 |
G→A |
100% |
I231I (ATC→ATT) |
guaA ← |
GMP synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,664,529 | 0 | G | A | 100.0%
| 302.4
/ NA
| 80 | I231I (ATC→ATT) | guaA | GMP synthetase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (80/0); total (80/0) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TTTTACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGGATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCATCGT > minE/1664462‑1664578
|
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:263157/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:390763/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:375623/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:371645/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:369027/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:355290/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:339038/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:468563/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:298216/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:298029/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:502158/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:209087/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:552903/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:192212/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:560727/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:56809/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:134613/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:128843/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:173984/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:14834/1‑70 (MQ=255)
ttttACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:111005/1‑70 (MQ=255)
ttatACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGAAt > 1:280669/4‑70 (MQ=255)
caccCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:4942/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCTTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtc > 1:193816/1‑69 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCt > 1:196639/1‑40 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTAcc > 1:366671/1‑43 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTcg > 1:588827/1‑49 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCgg > 1:350122/1‑52 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGCTGCGAg > 1:148107/1‑59 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGc > 1:289131/1‑56 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGc > 1:473961/1‑56 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:660138/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:401732/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:86370/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:650628/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:429339/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:442/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:445753/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:446173/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:627330/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:46150/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:474990/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:47806/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:598938/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:481162/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:353357/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:536982/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:546932/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:573654/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:375636/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:105193/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:129922/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:146378/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:167085/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:170308/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:175636/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:203734/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:208647/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:221034/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:24409/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:292686/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:316764/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:381819/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:369725/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:360671/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:101198/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:349506/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:337489/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:337280/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:322752/1‑71 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcg > 1:349365/1‑70 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcg > 1:519880/1‑70 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcg > 1:278489/1‑70 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcg > 1:395052/1‑70 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcg > 1:652063/1‑70 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcg > 1:307583/1‑70 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGACCTACAGCAtc > 1:103035/1‑69 (MQ=255)
cacaCCACCAGAGAGGCCGAGAATGACTATATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcgt > 1:162812/1‑71 (MQ=255)
cacaCCACCAGAGAGGACGAGAATGACTTTATCGTCGCCTACCTGCt > 1:606631/1‑47 (MQ=255)
aacacCACCAGAGAGGCCGAGAATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCAtcg > 1:124006/2‑70 (MQ=255)
|
TTTTACCGATAGCGCGGTGCAGCAGCATTGCGGTTACGGAGGAATCCACACCACCAGAGAGGCCGAGGATGACTTTATCGTCGCCTACCTGCTCGCGGATGCGAGCTACAGCATCGT > minE/1664462‑1664578
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
