Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I2 R2
|
36 |
87.2 |
4157695 |
97.3% |
4045437 |
63.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
667,574 |
C→A |
T304T (ACC→ACA) |
uup → |
fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 667,574 | 0 | C | A | 100.0%
| 260.9
/ NA
| 82 | T304T (ACC→ACA) | uup | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (30/52); total (30/52) |
AAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACCGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATGGAAGACGTTT > minE/667507‑667638
|
aaGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGc > 1:1634390/1‑70 (MQ=255)
gCCGCGTTCGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCaaa < 1:4025882/70‑1 (MQ=255)
gcgTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATg > 1:2015199/1‑71 (MQ=255)
cgTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCACAGATGc < 1:533356/71‑1 (MQ=255)
cgTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATg > 1:3524122/1‑70 (MQ=255)
cgTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGc < 1:2694037/71‑1 (MQ=255)
cgTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGc < 1:3912530/71‑1 (MQ=255)
gTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATg > 1:1397985/1‑69 (MQ=255)
gTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGc < 1:2942154/70‑1 (MQ=255)
tACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAg > 1:2616728/1‑71 (MQ=255)
tACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAg < 1:2528198/71‑1 (MQ=255)
tACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAg < 1:2669329/71‑1 (MQ=255)
gcgcCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTg < 1:1762331/71‑1 (MQ=255)
cgcCCTGTAAGCGATGCGTCGAGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTgg < 1:3187553/71‑1 (MQ=255)
cccTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGa < 1:2222747/70‑1 (MQ=255)
ccTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAg > 1:3906774/1‑58 (MQ=255)
ccTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTgg > 1:4027587/1‑68 (MQ=255)
ccTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAag < 1:292678/71‑1 (MQ=255)
ccTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAag < 1:2358465/71‑1 (MQ=255)
tGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCaa < 1:2933930/54‑1 (MQ=255)
tGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAagag > 1:3461997/1‑71 (MQ=255)
tGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAagag > 1:3492454/1‑71 (MQ=255)
aaaGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGc < 1:300649/71‑1 (MQ=255)
aaaGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGc > 1:2340962/1‑71 (MQ=255)
aaaGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGc > 1:4085233/1‑71 (MQ=255)
aaGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGc > 1:2063535/1‑70 (MQ=255)
aaGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGc > 1:3987461/1‑70 (MQ=255)
aGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGcc < 1:2510246/70‑1 (MQ=255)
cGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAg > 1:2619906/1‑70 (MQ=255)
tGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGc < 1:2292476/71‑1 (MQ=255)
tGCGTCGAGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAag < 1:3063671/60‑1 (MQ=255)
cGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTc < 1:1914224/71‑1 (MQ=255)
tCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCa < 1:818253/48‑1 (MQ=255)
tCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCa < 1:2463351/48‑1 (MQ=255)
tCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCa < 1:1544635/48‑1 (MQ=255)
tCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCg > 1:1560179/1‑71 (MQ=255)
gcgAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCaaa < 1:2456781/40‑1 (MQ=255)
gcgAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCgg > 1:2915817/1‑70 (MQ=255)
cgAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATg < 1:350970/43‑1 (MQ=255)
cgAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATg < 1:2897594/43‑1 (MQ=255)
cgAACGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATg < 1:1671882/43‑1 (MQ=255)
aCGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTgg > 1:689401/1‑47 (MQ=255)
aCGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTaaaa > 1:2557421/1‑71 (MQ=255)
aCGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTaaaa > 1:2379344/1‑71 (MQ=255)
aCGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTaaaa > 1:2211667/1‑71 (MQ=255)
aCGTGGTGAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTaaaa > 1:2833445/1‑71 (MQ=255)
tggtgAACGTCGCGAAGTGATGGGTACAGCAAAGATGc < 1:718053/38‑1 (MQ=255)
tggtgAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCg < 1:3096669/71‑1 (MQ=255)
gtgAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGt < 1:976366/70‑1 (MQ=255)
gtgAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGt < 1:4110259/70‑1 (MQ=255)
tgAACGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAagag > 1:3606832/1‑46 (MQ=255)
aaCGTCGCGAAGTGATGGGTACAGCAAAGATGCAg > 1:2908574/1‑35 (MQ=255)
aCGTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCg < 1:1623091/71‑1 (MQ=255)
gTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGaa < 1:3760245/71‑1 (MQ=255)
gTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGaa < 1:1451344/71‑1 (MQ=255)
gTCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGaa < 1:1255956/71‑1 (MQ=255)
tCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGaaa < 1:2625576/71‑1 (MQ=255)
tCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGaa < 1:3868311/70‑1 (MQ=255)
tCGCGAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGaa < 1:3248907/70‑1 (MQ=255)
cgcgAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAAt > 1:1759275/1‑71 (MQ=255)
gcgAAGTGATGGGTACAGCAAAGATGCAGGTGGaa < 1:2727661/35‑1 (MQ=255)
gcgAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCg > 1:3896245/1‑46 (MQ=255)
gcgAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAAt < 1:2387100/70‑1 (MQ=255)
gcgAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATg > 1:942245/1‑71 (MQ=255)
gcgAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATg < 1:1527763/71‑1 (MQ=255)
cgAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATgg < 1:146415/71‑1 (MQ=255)
cgAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATgg < 1:2313032/71‑1 (MQ=255)
cgAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATgg < 1:1880567/71‑1 (MQ=255)
cgAAGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATg < 1:3334595/70‑1 (MQ=255)
aaGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATGGaa < 1:434437/71‑1 (MQ=255)
aaGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATGGaa < 1:4084967/71‑1 (MQ=255)
aGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATgg > 1:3674703/1‑68 (MQ=255)
aGTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATGGAAg < 1:1884365/71‑1 (MQ=255)
gTGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATGGAAGa > 1:1117039/1‑71 (MQ=255)
tGATGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGcc < 1:1503235/39‑1 (MQ=255)
aTGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATGGAAGACg < 1:234648/70‑1 (MQ=255)
aTGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATGGAAGACg < 1:629570/70‑1 (MQ=255)
tGGGTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATc > 1:2949506/1‑50 (MQ=255)
ggTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCg < 1:2446158/49‑1 (MQ=255)
ggTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATGGAAGACGttt < 1:4136111/70‑1 (MQ=255)
ggTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATGGAAGACGttt < 1:1367730/70‑1 (MQ=255)
gTACAGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATGGAAGACGt > 1:1048986/1‑67 (MQ=255)
|
AAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACCGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTTTTCGAAATGGAAGACGTTT > minE/667507‑667638
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
