Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I2 R2
|
36 |
87.2 |
4157695 |
97.3% |
4045437 |
63.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,143,361 |
T→C |
noncoding (22/77 nt) |
metY ← |
tRNA‑Met |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,143,361 | 0 | T | C | 100.0%
| 160.4
/ NA
| 44 | noncoding (22/77 nt) | metY | tRNA‑Met |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (26/18); total (26/18) |
AGGGAAAGTGGTTGCGGGGGCCGGATTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAA > minE/2143298‑2143427
|
aGGGAAAGTGGTTGCGGGGGCCGGATTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGgc > 1:2812598/1‑71 (MQ=255)
aGGGAAAGTGGTTGCGGGGGCCGGATTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGgc > 1:1317951/1‑71 (MQ=255)
gAAAGTGGTTGCGGGGGCCGGATTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGgctgc < 1:1942762/71‑1 (MQ=255)
aaGTGGTTGCGGGGGCCGGATTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTc > 1:2456385/1‑71 (MQ=255)
gTTGCGGGGGCCGGATTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCAcc < 1:1992305/70‑1 (MQ=255)
gCGGGGGCCGGATTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCcgc > 1:2387462/1‑71 (MQ=255)
ccGGATTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTc < 1:2665847/56‑1 (MQ=255)
ggATTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCt > 1:2169032/1‑66 (MQ=255)
gATTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACg > 1:1700715/1‑71 (MQ=255)
gATTTGAACCGACGATATTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAAc < 1:3140692/70‑1 (MQ=17)
aTTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCAcccc < 1:155687/58‑1 (MQ=255)
aTTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGt < 1:1541460/71‑1 (MQ=255)
aTTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGt < 1:1997947/71‑1 (MQ=255)
ttGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACg < 1:324164/68‑1 (MQ=255)
aaCCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCa < 1:304837/70‑1 (MQ=255)
aCCGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCaaa > 1:2579335/1‑71 (MQ=255)
ccGACGATCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTgg > 1:1330318/1‑66 (MQ=255)
cgaTCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGCCAAATTCTa < 1:624938/71‑1 (MQ=21)
gaTCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCcgc < 1:1423687/48‑1 (MQ=255)
gaTCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTAc > 1:311926/1‑71 (MQ=255)
aTCTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTAc > 1:121865/1‑70 (MQ=255)
aTCTTCGGGTTATGAGCCCGACGAGACACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACt > 1:966995/1‑71 (MQ=255)
cTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCg > 1:1690751/1‑71 (MQ=255)
cTTCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCg > 1:3485312/1‑71 (MQ=255)
ttCGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTc < 1:64608/64‑1 (MQ=255)
cGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTc < 1:2612577/67‑1 (MQ=255)
cGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGttt > 1:3852270/1‑71 (MQ=255)
cGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGtt < 1:2370980/70‑1 (MQ=255)
cGGGTTATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGt < 1:2195790/69‑1 (MQ=255)
ttATGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTg > 1:1018409/1‑50 (MQ=255)
aTGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGtttt > 1:1133797/1‑66 (MQ=255)
tGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTa > 1:822397/1‑70 (MQ=255)
tGAGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTa > 1:1021287/1‑70 (MQ=255)
aGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTaaaa < 1:673755/71‑1 (MQ=255)
aGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTaaa > 1:3065827/1‑70 (MQ=255)
aGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTaaa > 1:1487139/1‑70 (MQ=255)
aGCCCGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTaaa > 1:1278272/1‑70 (MQ=255)
cccGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTaaaaaa > 1:594474/1‑71 (MQ=255)
cccGACCAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTaaaaaa > 1:185/1‑71 (MQ=255)
ccGACGAGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAAt > 1:3554282/1‑71 (MQ=255)
gacgaGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATg > 1:2122396/1‑70 (MQ=255)
cgaGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTTGCAAATTCTACTCGTTTTGGGTAAAAAATGCa > 1:2221684/1‑70 (MQ=255)
gaGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCaaa < 1:1668196/71‑1 (MQ=255)
gaGCCACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCaaa < 1:989771/71‑1 (MQ=255)
|
AGGGAAAGTGGTTGCGGGGGCCGGATTTGAACCGACGATCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCACCCCGCGCCTGAAACGTGGCAAATTCTACTCGTTTTGGGTAAAAAATGCAAA > minE/2143298‑2143427
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
