Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F17 I0 R1	71	95.7	2922988	91.7%	2680379	65.6

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	minE	2,864,584	C→T	100%	A295A (GCC→GCT)	hflK →	modulator for HflB protease specific for phage lambda cII repressor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	minE	2,864,584	0	C	T	100.0%	61.9 / NA	20	A295A (GCC→GCT)	hflK	modulator for HflB protease specific for phage lambda cII repressor
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (2/18); total (2/18)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TCCTCGAAGAGGCGCGTGCGTACAAGGCCCAGACCATCCTGGAAGCTCAGGGTGAAGTGGCGCGCTTTGCTAAACTTCTGCCGGAATATAAAG  >  minE/2864556‑2864648

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:2669386/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:898463/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:86323/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:793022/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:746437/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:579873/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:2806352/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:2761657/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:1220428/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:2616646/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:2534090/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:2353729/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:2194556/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:209272/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:2016339/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:1874758/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:1759176/43‑1 (MQ=255)

tCCTCGAAGAGGCGCGTGCGTACAAGGCTCAGACCATCCTGGa                                                    <  1:1372367/43‑1 (MQ=255)

                      cAAGGCTCAGACCATCCTGGAAGCTCAGGGTGAAGTGGCGCGCTTTGCTAAACTTCTGCCGGAATATAAAg  >  1:497326/1‑71 (MQ=255)

                      cAAGGCTCAGACCATCCTGGAAGCTCAGGGTGAAGTGGCGCGCTTTGCTAAACTTCTGCCGGAATATAAAg  >  1:811807/1‑71 (MQ=255)

TCCTCGAAGAGGCGCGTGCGTACAAGGCCCAGACCATCCTGGAAGCTCAGGGTGAAGTGGCGCGCTTTGCTAAACTTCTGCCGGAATATAAAG  >  minE/2864556‑2864648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

N/A